PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0034761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 352aa MW: 39746 Da PI: 8.3213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0034761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.8	1.5e-51	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Ptdeel+v+yL++kv+g +++l ++i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg RcHm_v2.0_Chr5g0034761 14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG 99 79**************************.89***********7777799**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl RcHm_v2.0_Chr5g0034761 100 TDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 9999.999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIGEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDEWVLCRIY KKNSSSSAVV QKPMSTMANV 180 PSKEQSCNGS SSECSSQLDD VLEWLPEIED RFFTLPRINS LKALPQQQED NKLNLQNLGN 240 LGSGNFDWAS LAGLNPVQEV VPNTQAQLNY NNDFYVPSIP PLCHVESPPE RMGRKMEEEV 300 QSGLKTQRVE NSGLFQQNSN LFTHNMRTPI DTYGLGTRFG LAGPGFSYGC EK

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIGEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDEWVLCRIY KKNSSSSAVV QKPMSTMANV  180
PSKEQSCNGS SSECSSQLDD VLEWLPEIED RFFTLPRINS LKALPQQQED NKLNLQNLGN  240
LGSGNFDWAS LAGLNPVQEV VPNTQAQLNY NNDFYVPSIP PLCHVESPPE RMGRKMEEEV  300
QSGLKTQRVE NSGLFQQNSN LFTHNMRTPI DTYGLGTRFG LAGPGFSYGC EK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-126	NAC family protein