PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0027071

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 492aa MW: 55085 Da PI: 5.1313

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0027071	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.4	6.4e-35	17	108	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d++++ l+sw++ +nsfvv++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F + RcHm_v2.0_Chr5g0027071 17 FLNKTYDMVDDPSTDYLVSWTDANNSFVVWNDAQFARDLLPKFFKHNNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLR 94 9**************************************************************999.........****** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k+ll++++r+k RcHm_v2.0_Chr5g0027071 95 GQKHLLKTVNRRKP 108 *********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MEDAATMINS ATSIPPFLNK TYDMVDDPST DYLVSWTDAN NSFVVWNDAQ FARDLLPKFF 60 KHNNFSSFVR QLNTYGFRKV HPDRWEFANE GFLRGQKHLL KTVNRRKPVN VQSHQQSAPV 120 PAPKVKSSQV AACVEVGKLG LEEEVERLKR DKNTLMQELI SLRQEQQATD NQLQNVGQRV 180 QGMEQRQKQM MSFLAKAMHS PGFLSQLVQH QNESNRRITG SNKKRRLPRQ EDEILVGKLS 240 SKTLDGQIVK YQPSMNEAAK AMLRQIMKMN ISPRREPSMN NPDAFLIDNV PSSNVLDSRN 300 CSRNLGVTLS EVSPTYMTAE SGFPVTCHSR ATSQVQPSPS VATDCVTATQ ISEENIYNLQ 360 EDTVLPELTA MQGIAPPSTV EIPNANFMPS ETVNTEYMDV SVLDQAMPTK TEVFSPEINP 420 DADVSQDGEP NLPGINDVFW DKFFDTDEID LSSVVGVTKD QEMQSGKGNG WDKIQHISPI 480 APQQTGLEGM IG

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MEDAATMINS ATSIPPFLNK TYDMVDDPST DYLVSWTDAN NSFVVWNDAQ FARDLLPKFF  60
KHNNFSSFVR QLNTYGFRKV HPDRWEFANE GFLRGQKHLL KTVNRRKPVN VQSHQQSAPV  120
PAPKVKSSQV AACVEVGKLG LEEEVERLKR DKNTLMQELI SLRQEQQATD NQLQNVGQRV  180
QGMEQRQKQM MSFLAKAMHS PGFLSQLVQH QNESNRRITG SNKKRRLPRQ EDEILVGKLS  240
SKTLDGQIVK YQPSMNEAAK AMLRQIMKMN ISPRREPSMN NPDAFLIDNV PSSNVLDSRN  300
CSRNLGVTLS EVSPTYMTAE SGFPVTCHSR ATSQVQPSPS VATDCVTATQ ISEENIYNLQ  360
EDTVLPELTA MQGIAPPSTV EIPNANFMPS ETVNTEYMDV SVLDQAMPTK TEVFSPEINP  420
DADVSQDGEP NLPGINDVFW DKFFDTDEID LSSVVGVTKD QEMQSGKGNG WDKIQHISPI  480
APQQTGLEGM IG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-125	HSF family protein