PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0026231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 321aa    MW: 37116.9 Da    PI: 7.4237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0026231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51261493127
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPtdeelv +yL++k+++k ++l e ik++diyk++PwdLp++++a++kewyfF++r +ky+++ r+nr+t sg+Wkatg d
  RcHm_v2.0_Chr5g0026231  26 PGFRFHPTDEELVGFYLRRKIQKKAISL-ELIKSIDIYKHDPWDLPTTTTAGDKEWYFFCRRGRKYKNSIRPNRVTGSGFWKATGID 111
                             9**************************9.99***************988999*********************************** PP

                     NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                             k+v+++ ++ +glkktLv+y+g+a kg+ktdW+mhe+r
  RcHm_v2.0_Chr5g0026231 112 KPVHDSYSNCIGLKKTLVYYRGSAGKGTKTDWMMHEFR 149
                             *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MDGKNTSCKD DHHDHQDHDD EDVPLPGFRF HPTDEELVGF YLRRKIQKKA ISLELIKSID  60
IYKHDPWDLP TTTTAGDKEW YFFCRRGRKY KNSIRPNRVT GSGFWKATGI DKPVHDSYSN  120
CIGLKKTLVY YRGSAGKGTK TDWMMHEFRR PSTNDNNNVH TNHTSCTAIS HTDPQEAEIW  180
TLCRIFKRSV SHRKYTPDWR ELSAKQSSSK KCNTTDQDRH QEPTNINRES YINFGASTIC  240
YEEKKPNVVN HTNYNNGSNS NQTLQNVGQF SSGMTTATHP CNMDSFTSSY SYADIENHDF  300
FNDNWEEFKS VVQLALDPSF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-84NAC family protein