PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022611

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 377aa MW: 41528.7 Da PI: 8.0026

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.6e-09	78	102	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ RcHm_v2.0_Chr5g0022611 78 GEKDCVHYMQTRTCKFGEGCKFDHP 102 7889********************8 PP
2	zf-CCCH	27.7	4.6e-09	154	174	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+++ G+CkyG++CkF+H++ RcHm_v2.0_Chr5g0022611 154 HFYLKPGQCKYGATCKFNHPK 174 59*****************96 PP
3	zf-CCCH	41.9	1.7e-13	298	322	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++++tG+CkyG++C+F+H+ RcHm_v2.0_Chr5g0022611 298 GQAECEYYMKTGECKYGAQCRFHHP 322 789*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MFLPQITFTI YILYGNIYIS SGFLVYTCLL RTIALYHQAL LGAHNPIGQM EAWYSTNPLA 60 TRPRFENTSL PIYPQRPGEK DCVHYMQTRT CKFGEGCKFD HPIWVPDGGV PDWKEVPLVA 120 PSESLPERPG APDCPGASKN GDVMPYPRGL LNPHFYLKPG QCKYGATCKF NHPKDIQIPS 180 ATQENKSGET ETDLKTEGTE VAVKPLDSFT PALLYNSKEL PVRPGEADCP FYLKTGRISL 240 PSFCADINPP VAAISYPLSA PAVAGFNIGV ASPAAFTYQT LAQPTVGASP TVYPQRFGQA 300 ECEYYMKTGE CKYGAQCRFH HPIDRPAVAL STTKPSQQEN VKLTLAGLPR RGVRMVELFS 360 VGTIPSLFIS RVHLSLF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MFLPQITFTI YILYGNIYIS SGFLVYTCLL RTIALYHQAL LGAHNPIGQM EAWYSTNPLA  60
TRPRFENTSL PIYPQRPGEK DCVHYMQTRT CKFGEGCKFD HPIWVPDGGV PDWKEVPLVA  120
PSESLPERPG APDCPGASKN GDVMPYPRGL LNPHFYLKPG QCKYGATCKF NHPKDIQIPS  180
ATQENKSGET ETDLKTEGTE VAVKPLDSFT PALLYNSKEL PVRPGEADCP FYLKTGRISL  240
PSFCADINPP VAAISYPLSA PAVAGFNIGV ASPAAFTYQT LAQPTVGASP TVYPQRFGQA  300
ECEYYMKTGE CKYGAQCRFH HPIDRPAVAL STTKPSQQEN VKLTLAGLPR RGVRMVELFS  360
VGTIPSLFIS RVHLSLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-115	C3H family protein