PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0011971
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BES1
Protein Properties Length: 329aa    MW: 34911.9 Da    PI: 8.5489
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0011971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822227.13.5e-7031531149
                  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 
                             ++++r+ptwkErEnnk+RERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++++++g s+s
  RcHm_v2.0_Chr5g0011971   3 TSGTRMPTWKERENNKKRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIMGGSTS 89 
                             5899*********************************************************************************** PP

                  DUF822  88 aspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                             asp+ss+q s+ +s+ +sp++sy++sp+sssfpsp+++  + + +a  +sl+p+l++ls++ ss
  RcHm_v2.0_Chr5g0011971  90 ASPCSSYQPSPCASYNPSPCASYNPSPASSSFPSPARYPANANGNAdaNSLIPWLKTLSSSGSS 153
                             *************************************99887665566*********9985443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MMTSGTRMPT WKERENNKKR ERRRRAIAAK IYSGLRMYGN YKLPKHCDNN EVLKALCNEA  60
GWTVEEDGTT YRKGCKPVDR MDIMGGSTSA SPCSSYQPSP CASYNPSPCA SYNPSPASSS  120
FPSPARYPAN ANGNADANSL IPWLKTLSSS GSSSATSKLP QLFIPGGSIS APVTPPLSSP  180
TSRTPRTKSD WDEAVAGSNW GSQHYSFLPS STPPSPGRQV LPDSGWLAGL QSGPSSPTFS  240
LVSRNPFGLK EALSGGGSRM WTPGQSGTCS PVVAAGLDHS GDVPMADGMA AEFAFGSNAT  300
GLVKPWEGER IEECVSDDLE LTLGSTKTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-105BES1 family protein