PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0007561

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 361aa MW: 39666 Da PI: 7.8699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0007561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg RcHm_v2.0_Chr5g0007561 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATG 100 79**************************.89***********8888999**************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk++l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl RcHm_v2.0_Chr5g0007561 101 TDKPILTSnGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 142 *99867788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG NQKVGVKKAL 120 VFYGGKPPKG IKSNWIMHEY RLVNDDNSGA GLKHPDPTNK KASLRLDDWV LCRIYKKNNA 180 QRSMMECDHH KEEDSTTTNS MEGIFVQSMP KPSPPKATNY TALLENDEDN FFDGILSSEG 240 VQNSSHSNLS HQFMSSSKSD VVMPANNHTS KRHLASPFWN EAGGSSSMGT NSSSSKRFHT 300 DLNSGGGSGG GGGVDESNTS FVSMLNQLPQ NAAFHHNSLL GSLGDGVLRP QFHLPSMNWN 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MESTDSSSGS GHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG NQKVGVKKAL  120
VFYGGKPPKG IKSNWIMHEY RLVNDDNSGA GLKHPDPTNK KASLRLDDWV LCRIYKKNNA  180
QRSMMECDHH KEEDSTTTNS MEGIFVQSMP KPSPPKATNY TALLENDEDN FFDGILSSEG  240
VQNSSHSNLS HQFMSSSKSD VVMPANNHTS KRHLASPFWN EAGGSSSMGT NSSSSKRFHT  300
DLNSGGGSGG GGGVDESNTS FVSMLNQLPQ NAAFHHNSLL GSLGDGVLRP QFHLPSMNWN  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-116	NAC family protein