PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0006871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 471aa MW: 52158.3 Da PI: 10.4528

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0006871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.8e-08	9	42	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 rW t++++ll+ av ++G+++W+++a+++ Rt RcHm_v2.0_Chr5g0006871 9 SRWGTWLELLLAGAVIRYGTRDWNLVAAELR-ART 42 69****************************9.888 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MVAEVIGESR WGTWLELLLA GAVIRYGTRD WNLVAAELRA RTVCPYAFTP EVCKAKYEDL 60 QKRYSGCKVW FEELRKKRME ELRQALKQSE NSIGSLESKL ESLKAEKAQG GCINYGSGQT 120 ESPVPSQKSE GHYPCGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAE DTETKREVSQ 180 SFKHEKISIG AFYGGLGGTL RKRRGKRKRK DCSRDVKEAS VGDSGFLDSA DAITALRCIE 240 HSTSECREDL GSSGAGDWKR GLTKDGTNKL LDVFNKFLEH KSASVFRHRL DSQKRRRYKK 300 MIRRHMDFDT IGSRIASHSV MSVKELFRDL LLLANNALVF YSKSTREYKS ALLLRDLTTK 360 TLQQHLKDSS SKATSANLSS NTLVCNPPVK PRSARPGNQK LSRKATNAGK AAAKTSNKSK 420 KTGNANADSS PSVQSFAVTK RTSGHQRTVG RKTVGQQNVV PVKGRKRGRT K

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MVAEVIGESR WGTWLELLLA GAVIRYGTRD WNLVAAELRA RTVCPYAFTP EVCKAKYEDL  60
QKRYSGCKVW FEELRKKRME ELRQALKQSE NSIGSLESKL ESLKAEKAQG GCINYGSGQT  120
ESPVPSQKSE GHYPCGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAE DTETKREVSQ  180
SFKHEKISIG AFYGGLGGTL RKRRGKRKRK DCSRDVKEAS VGDSGFLDSA DAITALRCIE  240
HSTSECREDL GSSGAGDWKR GLTKDGTNKL LDVFNKFLEH KSASVFRHRL DSQKRRRYKK  300
MIRRHMDFDT IGSRIASHSV MSVKELFRDL LLLANNALVF YSKSTREYKS ALLLRDLTTK  360
TLQQHLKDSS SKATSANLSS NTLVCNPPVK PRSARPGNQK LSRKATNAGK AAAKTSNKSK  420
KTGNANADSS PSVQSFAVTK RTSGHQRTVG RKTVGQQNVV PVKGRKRGRT K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	211	RKRRGKRKRKD
2	203	213	RKRRGKRKRKD
3	293	300	QKRRRYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-22	MYB_related family protein