PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0000511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 422aa MW: 47569.8 Da PI: 8.7289

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0000511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.1e-24	258	344	1	86
trihelix 1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW + e++aLi++r+++e+++r+ +++ + lWee++ m + gf rs +Ckekwen+nk++k+ +++kkr +++ +tc+yf +l RcHm_v2.0_Chr5g0000511 258 RWLQFEIRALIALRTSLEHKFRTpiNSSHGSLWEEIALGMNRMGFDRSGRKCKEKWENMNKYFKRAITNDKKR-PTNAKTCQYFYEL 343 8*******************87789****************************************98.88999***999 PP trihelix 86 e 86 e RcHm_v2.0_Chr5g0000511 344 E 344 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MEVLTGDRNI PDPAAAAEEQ VFPAHISPFS ETHQVVFANP TAAAMTMTPQ KLRIRCNGRS 60 PAVDAAPTLP DDADPPQLGS ADNGLSPHNA DEHFKAQGVE FVNWKQKRKR TSSCSSSSTR 120 KKSKRLEMLE HFLESLVNKM MEKQEQMHKQ LIEMVQDREK ERIAKEEAWK QHELERITRD 180 EEVRAQQTSR SLALINFVQS LLGSDVQVPQ PAPLVAQPVA TVQPPTSNQY HDQRVKENKN 240 LHKDTAIAKC IATPTDKRWL QFEIRALIAL RTSLEHKFRT PINSSHGSLW EEIALGMNRM 300 GFDRSGRKCK EKWENMNKYF KRAITNDKKR PTNAKTCQYF YELELLYKNG LLNLGNGFSP 360 TSSLGNGFSC TNNQKETRSE NESQQCVLSN VDTSLLTCAT IPSVLNSNEA AERTRAVVSP 420 AL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MEVLTGDRNI PDPAAAAEEQ VFPAHISPFS ETHQVVFANP TAAAMTMTPQ KLRIRCNGRS  60
PAVDAAPTLP DDADPPQLGS ADNGLSPHNA DEHFKAQGVE FVNWKQKRKR TSSCSSSSTR  120
KKSKRLEMLE HFLESLVNKM MEKQEQMHKQ LIEMVQDREK ERIAKEEAWK QHELERITRD  180
EEVRAQQTSR SLALINFVQS LLGSDVQVPQ PAPLVAQPVA TVQPPTSNQY HDQRVKENKN  240
LHKDTAIAKC IATPTDKRWL QFEIRALIAL RTSLEHKFRT PINSSHGSLW EEIALGMNRM  300
GFDRSGRKCK EKWENMNKYF KRAITNDKKR PTNAKTCQYF YELELLYKNG LLNLGNGFSP  360
TSSLGNGFSC TNNQKETRSE NESQQCVLSN VDTSLLTCAT IPSVLNSNEA AERTRAVVSP  420
AL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	5e-43	Trihelix family protein