PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 337aa    MW: 37542.1 Da    PI: 7.6277
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.72.7e-332074155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprl+WtpeLH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl
  RcHm_v2.0_Chr4g0439621 20 KPRLKWTPELHQRFVEAVNQLGGADKATPKTLMRVMGIHGLTLYHLKSHLQKYRL 74
                            79****************************************************8 PP
2Myb_DNA-binding63.44.5e-202273148
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48
                            r++WT+e+++++v+av+qlGg    t+kt +r mg  g+tl+++ks++qky+
  RcHm_v2.0_Chr4g0439621 22 RLKWTPELHQRFVEAVNQLGGAdkaTPKTLMRVMGiHGLTLYHLKSHLQKYR 73
                            89******************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MGLQNMQNQN MNLVLSTDAK PRLKWTPELH QRFVEAVNQL GGADKATPKT LMRVMGIHGL  60
TLYHLKSHLQ KYRLGKSQQS ENCSDSLQED YKEIQSSDGH FCTDINDETH SRINESAQIA  120
QSLRLQMEVQ RKLHEQIEVQ RHLQLRIEAQ GKYLQSVLKK AQETLSGYNS SSVGVELAKA  180
EISQLVSMVN NGCPSSSFSE LTETGTPTLK DIERKQIRGT ICSMESSLTS SESSGRQEEK  240
SNTTCVELPL MEIHPEVKSL NNVTSNNQNH GIGRKRSISS SISDGMCVEQ PVAKRSSATH  300
TDKSGNHLRF VTIDLNSKYQ NDIDSGSKVL DLNSKGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.16e-87G2-like family protein