PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0437281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 335aa    MW: 36625.4 Da    PI: 6.2492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0437281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-154897255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            r +h+  E+rRR++iN++f+ Lr+l+P++     +K + a+ L +++eY+++Lq
  RcHm_v2.0_Chr4g0437281 48 RSKHSVTEQRRRSKINERFQILRDLIPHS----EQKRDTASFLLEVIEYVQYLQ 97
                            899*************************8....79******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MRSAGKGSQE EDEYEDDDFG SKKDGPSSNS SNPNSKDAKS NDKASAIRSK HSVTEQRRRS  60
KINERFQILR DLIPHSEQKR DTASFLLEVI EYVQYLQERV NKHEGSCQGW SAEPTKLMPW  120
RNSHWRVQSF VGPPQPIKND TGVISPFPGK FDENNISITP NILANSTKNP VESEPSRDSK  180
VMDQPPEIVN KGLPPPMPLP ENLLPPVGND GMLARPLHGP ISDAQSTQCP TTSGDALNQR  240
EELTIEGGTI SISSVYSQGL LNSLSHALQT AGVDLSQASV SVQIDLGNRA NRGLSAGTPA  300
SKDRENPHSS NQTMAHFRDA GSGDDSDQAH KRLKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-98bHLH family protein