PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0420791

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 290aa MW: 32732.3 Da PI: 9.2068

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0420791	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.2	3.1e-30	128	229	2	94
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssase 72 +g+kdrhsk++T++g+Rd RvRl a++a++ +d qd+LG+ ++sk+++WL+++ak+ai+el ++ + RcHm_v2.0_Chr4g0420791 128 TGRKDRHSKVCTAKGPRDHRVRLAAHIAIQSYDAQDQLGYYRPSKAVDWLIKKAKAAIDELDELspwnpnsisvqiisspT------ 208 79**************************************************************77666555543322220...... PP TCP 73 ceaesssssasnsssgkaaksa 94 + s + ++n s + ++ +a RcHm_v2.0_Chr4g0420791 209 -VPISAAQDTQNASLHFSMVEA 229 .222222222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MCDARESLNE DKKTDLPSKV FFSFSFLSFF LYSFFFPFLF FSFFLSLFFF FFFLGFFFLS 60 FSPCQHHRFR RTTIEYAGRK MGESHNNLHH RTMTSSSAAS RLDLGIRTAS SSTASEIVEA 120 RGHILRSTGR KDRHSKVCTA KGPRDHRVRL AAHIAIQSYD AQDQLGYYRP SKAVDWLIKK 180 AKAAIDELDE LSPWNPNSIS VQIISSPTVP ISAAQDTQNA SLHFSMVEAP SSLSANQQGA 240 MVGSNGVAEL VNQNNSNFLQ VRMVWRPKLL IFVCLQLPFI EVGLEAEVVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-40	TCP family protein