PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0396691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GATA

Protein Properties

Length: 1021aa MW: 112074 Da PI: 8.8845

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0396691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	28.7	1.8e-09	109	139	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cg+t+Tp+W +g+ +CnaCG y++ + RcHm_v2.0_Chr4g0396691 109 CAYCGVTQTPQWP---EGPLGICNACGFSYKSGR 139 99********7...666779*******987 PP
2	GATA	50.5	2.8e-16	179	212	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg t+Tp+WR gp g+ tLCnaCG++y++ + RcHm_v2.0_Chr4g0396691 179 CTHCGITQTPQWRLGPLGPQTLCNACGVRYKSGR 212 *******************************987 PP
3	GATA	32.9	8.6e-11	486	514	1	29
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 C+nCg+ ++p+W +gp g+kt+C +CGl RcHm_v2.0_Chr4g0396691 486 CQNCGAEQSPQWWEGPLGPKTICLSCGLA 514 ***************************96 PP
4	GATA	27.6	4e-09	741	769	1	29
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 C+nCg+ +Tp W +p g+k LC aCGl RcHm_v2.0_Chr4g0396691 741 CQNCGVQQTPSWLGSPLGPKPLCHACGLA 769 ***************************95 PP
5	GATA	24.3	4.3e-08	875	904	1	31
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 C +Cg ++T WR gp g++tLCnaCG +y+ RcHm_v2.0_Chr4g0396691 875 CMQCG-KQTNRWRMGPLGPTTLCNACGNKYQ 904 77888.579******************9985 PP
6	GATA	54.1	2.1e-17	961	992	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+ kTplWR+gp g+ktLCnaCGl++ k RcHm_v2.0_Chr4g0396691 961 CQHCGAEKTPLWRSGPLGSKTLCNACGLRWYK 992 ******************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence
MVSLDPDDFL AGLADDRDYP SRPFPATENL AEEEELEWLS NKDVFPAIET CMLTEEPPKK 60 AVANAEQGNP VSVSVVKASI GGGGALLLPL MPSRKTKDES VKVKSMRVCA YCGVTQTPQW 120 PEGPLGICNA CGFSYKSGRL CTEDSPKVQS IKSDKVKSIK SDKVNGIKSD KVKTIKRKCT 180 HCGITQTPQW RLGPLGPQTL CNACGVRYKS GRLCPEYRPA NSPTFSQELH SNKHRKVMEI 240 RNQIYGNEGT VVRPVDKCTN SASTTAPEKM KKDMFPTVAT VEQPRRSVIA EQQSPVSVLE 300 NSTNSSITLK PHQPPSKFLR EQQLFCNQPN NKHNQEDTAS VEIKRNIILM SSCGTLELPY 360 KAPSEVLGQQ QLFSCQTTSK RRKKNIVEMK NEGNNATLTS SCGNLELPHQ APSQFLEQHQ 420 PNNKCNKKHT AKVEMTMKPV DICSTTLMKS KKDSLPAIET LNILEHSRGI FIAEQQSPVV 480 GIAVNCQNCG AEQSPQWWEG PLGPKTICLS CGLAKYTGRR KRSMSLVSNK KRKKEDIAKV 540 EMAVKPGDKC TNSTTALMNS KKDPLPAVGT SNISEQPSVI VISEQQSPAS VFENSISSSM 600 MLMSSSGTVN LHNQAPSEFP PQNQFCDQAN NKPKVKDTTT VEFEGNSSTL MRSSGALEPL 660 HQAPNEFLDQ QQQAKNKPNK KDTAKVESDG SSTTLMSSCG TNKLPHQAQS EFLVQQQLFC 720 NQANNGTKKE NTAKGESEGK CQNCGVQQTP SWLGSPLGPK PLCHACGLAK CTAGQQRSIA 780 VEVGKLACPS PATGEFTNST CTFPVLEEFH LSQKPSDIAN AEQQKPFSVL ESSTNNSIAL 840 MSSCRIKIPH RARSKVLRRR RSTIPGQQVG VGKNCMQCGK QTNRWRMGPL GPTTLCNACG 900 NKYQPLWGRS GVTVDIAKNC QHCGSEETTQ LLLCPLGPKT LCTVCYHWFK ASAEVEIERK 960 CQHCGAEKTP LWRSGPLGSK TLCNACGLRW YKFRDLCRDR SASSPTLLRE LHSNCYRNVL 1020 I

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence

MVSLDPDDFL AGLADDRDYP SRPFPATENL AEEEELEWLS NKDVFPAIET CMLTEEPPKK  60
AVANAEQGNP VSVSVVKASI GGGGALLLPL MPSRKTKDES VKVKSMRVCA YCGVTQTPQW  120
PEGPLGICNA CGFSYKSGRL CTEDSPKVQS IKSDKVKSIK SDKVNGIKSD KVKTIKRKCT  180
HCGITQTPQW RLGPLGPQTL CNACGVRYKS GRLCPEYRPA NSPTFSQELH SNKHRKVMEI  240
RNQIYGNEGT VVRPVDKCTN SASTTAPEKM KKDMFPTVAT VEQPRRSVIA EQQSPVSVLE  300
NSTNSSITLK PHQPPSKFLR EQQLFCNQPN NKHNQEDTAS VEIKRNIILM SSCGTLELPY  360
KAPSEVLGQQ QLFSCQTTSK RRKKNIVEMK NEGNNATLTS SCGNLELPHQ APSQFLEQHQ  420
PNNKCNKKHT AKVEMTMKPV DICSTTLMKS KKDSLPAIET LNILEHSRGI FIAEQQSPVV  480
GIAVNCQNCG AEQSPQWWEG PLGPKTICLS CGLAKYTGRR KRSMSLVSNK KRKKEDIAKV  540
EMAVKPGDKC TNSTTALMNS KKDPLPAVGT SNISEQPSVI VISEQQSPAS VFENSISSSM  600
MLMSSSGTVN LHNQAPSEFP PQNQFCDQAN NKPKVKDTTT VEFEGNSSTL MRSSGALEPL  660
HQAPNEFLDQ QQQAKNKPNK KDTAKVESDG SSTTLMSSCG TNKLPHQAQS EFLVQQQLFC  720
NQANNGTKKE NTAKGESEGK CQNCGVQQTP SWLGSPLGPK PLCHACGLAK CTAGQQRSIA  780
VEVGKLACPS PATGEFTNST CTFPVLEEFH LSQKPSDIAN AEQQKPFSVL ESSTNNSIAL  840
MSSCRIKIPH RARSKVLRRR RSTIPGQQVG VGKNCMQCGK QTNRWRMGPL GPTTLCNACG  900
NKYQPLWGRS GVTVDIAKNC QHCGSEETTQ LLLCPLGPKT LCTVCYHWFK ASAEVEIERK  960
CQHCGAEKTP LWRSGPLGSK TLCNACGLRW YKFRDLCRDR SASSPTLLRE LHSNCYRNVL  1020
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	519	534	RRKRSMSLVSNKKRKK
2	520	535	RRKRSMSLVSNKKRKK
3	530	534	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34680.2	2e-33	GATA family protein