PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0394421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 131aa MW: 15471.6 Da PI: 10.2816

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0394421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.6	1.2e-14	30	91	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ +t++ +++L+elF++ r p+ e+++++ +l +++ + V++WF N+Ra+ek+ RcHm_v2.0_Chr4g0394421 30 STRWIPTTDHIRILKELFYNkeFRSPTIEQIQRICLQLkwygKIEFKSVYYWFVNQRAREKQ 91 58***************75589**********************************97 PP
2	Wus_type_Homeobox	79.8	3.6e-26	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++ i+iL+el++ + r+P+ e+iqri +L+ yGkie k V+yWF N++aRe+qk+ RcHm_v2.0_Chr4g0394421 29 SSTRWIPTTDHIRILKELFYnKEFRSPTIEQIQRICLQLKWYGKIEFKSVYYWFVNQRAREKQKK 93 689************987589**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence
MEPQSRHPTE DGGSNKVAGS SANMLRRKSS TRWIPTTDHI RILKELFYNK EFRSPTIEQI 60 QRICLQLKWY GKIEFKSVYY WFVNQRAREK QKKRSTSDVH VPMQRSGLVG DDNVTNWKHE 120 DQWGTMAVMD P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-26	WOX family protein