PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0387751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 350aa MW: 40432.6 Da PI: 5.1567

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0387751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.7	7e-37	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+yei+ed+++++++sws+ +nsfvv+d++ fa ++LpkyFkh nf+SFvRQLn+YgF+kv++++ weF+h+ F + RcHm_v2.0_Chr4g0387751 27 FLNKTYEIVEDSTTNHIVSWSKANNSFVVWDPQAFAISLLPKYFKHGNFSSFVRQLNTYGFRKVDTDK---------WEFAHEVFLR 104 9**************************************************************999.........****** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll++i+r++++ RcHm_v2.0_Chr4g0387751 105 GQKHLLKNIRRRRTS 119 *********9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MNPQGQVKEA PLPVPLERLN DQGPPPFLNK TYEIVEDSTT NHIVSWSKAN NSFVVWDPQA 60 FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE VFLRGQKHLL KNIRRRRTSH 120 HNVHYGSKQD LDSCIEVGSF GSLDGEIDQL RRDKEVLMGE LVKLRQQQQT ARLHLHGMED 180 RLKRTEMKQQ QMMNFLARAM QNPNFLQQLV QKKERKKQLE EAITKKRRRT IEGPSSIEVG 240 ALGQGGGEAV VKVEPEYYGD ISELDVSGLD NFAMDMPVTD ENEKVHDGEE CMEKEEEYER 300 RGKDLSEVFW KEFLNEGVDE EIEVLGVQEE DEEDVSVLIE QLGCLVSKPK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MNPQGQVKEA PLPVPLERLN DQGPPPFLNK TYEIVEDSTT NHIVSWSKAN NSFVVWDPQA  60
FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE VFLRGQKHLL KNIRRRRTSH  120
HNVHYGSKQD LDSCIEVGSF GSLDGEIDQL RRDKEVLMGE LVKLRQQQQT ARLHLHGMED  180
RLKRTEMKQQ QMMNFLARAM QNPNFLQQLV QKKERKKQLE EAITKKRRRT IEGPSSIEVG  240
ALGQGGGEAV VKVEPEYYGD ISELDVSGLD NFAMDMPVTD ENEKVHDGEE CMEKEEEYER  300
RGKDLSEVFW KEFLNEGVDE EIEVLGVQEE DEEDVSVLIE QLGCLVSKPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	117	RGQKHLLKNIRRRR
2	215	229	RKKQLEEAITKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-120	HSF family protein