PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0497321

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 416aa MW: 46708.4 Da PI: 7.5163

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0497321	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	53	107	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl RcHm_v2.0_Chr3g0497321 53 KPRLKWTPDLHERFIEAVNQLGGAEKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 107 79****************************************************8 PP
2	Myb_DNA-binding	65.8	7.9e-21	55	106	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+kt+++ mg g+tl+++ks++qky+ RcHm_v2.0_Chr3g0497321 55 RLKWTPDLHERFIEAVNQLGGAekaTPKTVMKLMGiPGLTLYHLKSHLQKYR 106 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MMYHHHHHQH QHQAKNIHSS SSSRMAIPPE RHLFLQPETC PEDSGLVLST DAKPRLKWTP 60 DLHERFIEAV NQLGGAEKAT PKTVMKLMGI PGLTLYHLKS HLQKYRLSKN LHVHANSGTT 120 NKIGAVAAAV PGERISEVNG THMNSMNIGP QSNKGLHINE TLQMQIEVQR RLHEQLEVQR 180 HLQLRIEAQG KYLQSVLEKA QETLGRQNLG TVGLEAAKVQ LSELVSKVST QCLNSAFTEL 240 KEVQGSCPQN QPTDCSVDSC LTSCEGSKKD QEIQNNSRMG LRAYNSSRVL MESEETILHL 300 KENNMFVSTL SKNADQRMFP SEARSGDLSM SIGLEREKWN RSNCNSEERF KARNTDDSFL 360 EHTNNKADSV KVDQTQKVSQ GYSVPYFAAK LDLNSHDDID ASSSCKQFDL NGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MMYHHHHHQH QHQAKNIHSS SSSRMAIPPE RHLFLQPETC PEDSGLVLST DAKPRLKWTP  60
DLHERFIEAV NQLGGAEKAT PKTVMKLMGI PGLTLYHLKS HLQKYRLSKN LHVHANSGTT  120
NKIGAVAAAV PGERISEVNG THMNSMNIGP QSNKGLHINE TLQMQIEVQR RLHEQLEVQR  180
HLQLRIEAQG KYLQSVLEKA QETLGRQNLG TVGLEAAKVQ LSELVSKVST QCLNSAFTEL  240
KEVQGSCPQN QPTDCSVDSC LTSCEGSKKD QEIQNNSRMG LRAYNSSRVL MESEETILHL  300
KENNMFVSTL SKNADQRMFP SEARSGDLSM SIGLEREKWN RSNCNSEERF KARNTDDSFL  360
EHTNNKADSV KVDQTQKVSQ GYSVPYFAAK LDLNSHDDID ASSSCKQFDL NGFSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-136	G2-like family protein