PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0495921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 268aa MW: 28971.2 Da PI: 5.8814

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0495921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.1	2e-15	32	92	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ RcHm_v2.0_Chr3g0495921 32 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 92 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.7	5.9e-34	31	94	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q RcHm_v2.0_Chr3g0495921 31 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 94 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MEDHQGQGGG HEAKEPNSPN SNGSSERSEP VRSRWIPKPE QILILESIFN SGMVNPPKEE 60 TVRIRKLLEK FGSVGDANVF YWFQNRRSRS RRRQRQLQAS LEQRNQAAAD QQVGGAIQYG 120 SSSTTSFSAP PPPAMAFGPS TPSTFGSNYD LVGDSSSSSC ATMAADDHFF SVSGQMGFPD 180 IEHSSSGVTS VLGPSDASSL HFQSGVNLMM TVFINGVPTE VPRGPLDMKA MFGTQDVLLV 240 HSSGVPLPIN EFGFLAHSLQ PGESYFLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	9e-62	WOX family protein