PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0491061
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 290aa    MW: 33083.9 Da    PI: 5.2096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0491061genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr3g0491061 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding53.94.2e-1770111447
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  RcHm_v2.0_Chr3g0491061  70 LSEHEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                             5899***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEHEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLP IGNEIENQSQ QKQHVQNDQE QQQQQEEQSC TATDDTFEID QINEGAKVED  180
KVEFVTMDHD EHELLNGFCI DEVPLIEPHE IHLVPNCAPS SSTSSSSSCS NSSSNFLEDL  240
QYLPDFGWPN CDYSSSNNNN NHIIINNDTM GLWDDDFSSW GQESWAFGVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-92MYB family protein