PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0480201

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 383aa MW: 41131.4 Da PI: 9.4285

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0480201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	139	1.3e-43	85	162	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls +k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ RcHm_v2.0_Chr3g0480201 85 RCQVEGCNVDLSGVKAYYSRHKVCAMHSKTPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 162 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGSTSMTTTD SGGSSSSPPN NSSTEESLNG LKFGRKIYFE DAALGPNPPK SGSGSAGSSS 60 SAATPPKKQR SGGGAGLVHQ GHPPRCQVEG CNVDLSGVKA YYSRHKVCAM HSKTPTVIVA 120 GLEQRFCQQC SRFHQLPEFD QGKRSCRRRL AGHNERRRKP QPGSMMSTRF GRLSSSIYEN 180 TSRVGSFLMD FTAYPRAGRD EWATARTCER PPGNQTVTAT GKFLQHPWQS NPENTRSDLY 240 LQGSAGGTSY PGPGIPPGEC VSGVTDSSCA LSLLSNQPWD SRNRGVGTNA FINTQGAPVA 300 QSIANVGTIN PFPTTSWGFK GNEAGSSSHQ MLPDLGLGQI SQPHNSHYSS ELELSQQGRR 360 QQNMELGNSR GYDSSSQHMH WSL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGSTSMTTTD SGGSSSSPPN NSSTEESLNG LKFGRKIYFE DAALGPNPPK SGSGSAGSSS  60
SAATPPKKQR SGGGAGLVHQ GHPPRCQVEG CNVDLSGVKA YYSRHKVCAM HSKTPTVIVA  120
GLEQRFCQQC SRFHQLPEFD QGKRSCRRRL AGHNERRRKP QPGSMMSTRF GRLSSSIYEN  180
TSRVGSFLMD FTAYPRAGRD EWATARTCER PPGNQTVTAT GKFLQHPWQS NPENTRSDLY  240
LQGSAGGTSY PGPGIPPGEC VSGVTDSSCA LSLLSNQPWD SRNRGVGTNA FINTQGAPVA  300
QSIANVGTIN PFPTTSWGFK GNEAGSSSHQ MLPDLGLGQI SQPHNSHYSS ELELSQQGRR  360
QQNMELGNSR GYDSSSQHMH WSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-71	SBP family protein