PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0474911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 363aa MW: 40334.8 Da PI: 6.5115

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0474911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.2	1.4e-32	94	201	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++ RcHm_v2.0_Chr3g0474911 94 FEKPLTPSDVGKLNRLVIPKQHAERYfplgggnggesGGE--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDA 178 99***************************998865444..6679************************************* PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD+v+F++ ++++++l+++++r+ RcHm_v2.0_Chr3g0474911 179 GDVVLFERRRNDSERLFIGWRRR 201 ***99889999****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MSLNHFSSSE LQETQWWNNS TTQQNQQQPP EFTMDTFHPQ LYQNYQPGWL GSQISQQPPT 60 LNFNLNHQHN DAADRELQQP ELQIDMGDDK ETMFEKPLTP SDVGKLNRLV IPKQHAERYF 120 PLGGGNGGES GGEKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD 180 VVLFERRRND SERLFIGWRR RAAQESSGAG GGASNTSAQV SGSGGGGGAG PGVESGGSRA 240 GWTRIFYSAP QSYPAPHHHS VPYPPDYLQH AAAAAAGSPV QNQTPSSSSG CNSRILRLFG 300 VNLECQQQQD DESEPSTPDG SSLSSQGPTH HQFYPNPTNA YYGDHRDFTF SRDANPPMRN 360 RRG

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MSLNHFSSSE LQETQWWNNS TTQQNQQQPP EFTMDTFHPQ LYQNYQPGWL GSQISQQPPT  60
LNFNLNHQHN DAADRELQQP ELQIDMGDDK ETMFEKPLTP SDVGKLNRLV IPKQHAERYF  120
PLGGGNGGES GGEKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD  180
VVLFERRRND SERLFIGWRR RAAQESSGAG GGASNTSAQV SGSGGGGGAG PGVESGGSRA  240
GWTRIFYSAP QSYPAPHHHS VPYPPDYLQH AAAAAAGSPV QNQTPSSSSG CNSRILRLFG  300
VNLECQQQQD DESEPSTPDG SSLSSQGPTH HQFYPNPTNA YYGDHRDFTF SRDANPPMRN  360
RRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	9e-60	B3 family protein