PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0471731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 513aa MW: 56021.5 Da PI: 8.0667

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0471731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.6	6.8e-18	135	221	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ + +L++a+ ++ ++l+rg+l++ +Weev+ + r++ ++s +qCk+k +nl+kryk +++++ + + +s s++p+f+++ RcHm_v2.0_Chr3g0471731 135 EWSDGAIACLLDAYMDKFTQLNRGNLRGRDWEEVAVIVsqRSERQTKSVEQCKNKVDNLKKRYKLERHRMTN-SGNSPSHWPWFKRM 220 5***********************************777777799******************998.5888899***** PP trihelix 86 e 86 e RcHm_v2.0_Chr3g0471731 221 E 221 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MASCDDDFSL LGSNDSNPNH RNPHAPPNSH RIPQPYAPRF ATRTTPPVVT VSSGDKANAG 60 EDQDDGEDYG DAAAFCSNPF DSGTDQNDVA SKRKDQSDEL SDGAGGGGGG GSYTIIRRSK 120 SSAVAAGEYR KDREEWSDGA IACLLDAYMD KFTQLNRGNL RGRDWEEVAV IVSQRSERQT 180 KSVEQCKNKV DNLKKRYKLE RHRMTNSGNS PSHWPWFKRM EQIVGNSLPA KATSDDDRGV 240 TSSGPTPQKS KRNASAITSP VTQINKQPKF SLKWRRVVFK VSGAALAGTA ANNIDPKITM 300 LIAREVAMAC RSGVEVAIVV GGRNFFCGNT WVNETGLDRS TAYQTGMMTT VMNSILLQSA 360 FEKMAIQTRV QSAFSLPELA EPYNRQRAIR HLEKGRVVIF AGIGAGTGNP LFTTDTAAAL 420 RASEIHAEAV LKGTNVDGVY DRNSQDNNFT FQHISFRELV TRGEHNMDTM ALTLCEDNRI 480 PVVIFNLLET GNISKALRGE QVGTLIDQVG SMS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MASCDDDFSL LGSNDSNPNH RNPHAPPNSH RIPQPYAPRF ATRTTPPVVT VSSGDKANAG  60
EDQDDGEDYG DAAAFCSNPF DSGTDQNDVA SKRKDQSDEL SDGAGGGGGG GSYTIIRRSK  120
SSAVAAGEYR KDREEWSDGA IACLLDAYMD KFTQLNRGNL RGRDWEEVAV IVSQRSERQT  180
KSVEQCKNKV DNLKKRYKLE RHRMTNSGNS PSHWPWFKRM EQIVGNSLPA KATSDDDRGV  240
TSSGPTPQKS KRNASAITSP VTQINKQPKF SLKWRRVVFK VSGAALAGTA ANNIDPKITM  300
LIAREVAMAC RSGVEVAIVV GGRNFFCGNT WVNETGLDRS TAYQTGMMTT VMNSILLQSA  360
FEKMAIQTRV QSAFSLPELA EPYNRQRAIR HLEKGRVVIF AGIGAGTGNP LFTTDTAAAL  420
RASEIHAEAV LKGTNVDGVY DRNSQDNNFT FQHISFRELV TRGEHNMDTM ALTLCEDNRI  480
PVVIFNLLET GNISKALRGE QVGTLIDQVG SMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein