PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0471711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 489aa MW: 55747.9 Da PI: 6.5461

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0471711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.5	8.7e-24	109	209	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ + RcHm_v2.0_Chr3g0471711 109 KWTDTMVRLLIMAVFYIGDEGGSEGpdptgkkksgggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtA 195 7**************9999975446667788999999********************************************55 PP trihelix 73 sessstcpyfdqle 86 ++++++ +++++e RcHm_v2.0_Chr3g0471711 196 CKVVENQGLLEKME 209 99999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MEPNGLGGGL FPEMRSGMLG LEMPLHQTQN PPNPQNPHHH MHQPQMVSYA HHEADHNHHP 60 QAHQSAKHGY PYATKPKQIT LSDEDEPGFG ADDSAGENKR KISPWQRMKW TDTMVRLLIM 120 AVFYIGDEGG SEGPDPTGKK KSGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKDEVKK LLNSKHLFFR EMCAYHNSCG 240 HGTVGAAGAS GVHNSSPEDP SEVQLQQQQQ QPQQQRCFHV SENAHVVANS GRSETEGSKM 300 FKAESGGEEE DEDYEDDDSE DDDEEEEEGV VEGVSRGQIG HGHEDEDEND HERAKRPRKG 360 SCFSGSSHKM LMQQLSSEVS GVIQDVSKSP WEKKQWMKAR LIQLEQQQVN YQYQSFELEK 420 QRLKWVKYSS KKERDMERAK LGNERRRLEN ERMLLLVRQK ELELLDLHHQ QQQQHQQQNS 480 SNKRSDLTG

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MEPNGLGGGL FPEMRSGMLG LEMPLHQTQN PPNPQNPHHH MHQPQMVSYA HHEADHNHHP  60
QAHQSAKHGY PYATKPKQIT LSDEDEPGFG ADDSAGENKR KISPWQRMKW TDTMVRLLIM  120
AVFYIGDEGG SEGPDPTGKK KSGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKDEVKK LLNSKHLFFR EMCAYHNSCG  240
HGTVGAAGAS GVHNSSPEDP SEVQLQQQQQ QPQQQRCFHV SENAHVVANS GRSETEGSKM  300
FKAESGGEEE DEDYEDDDSE DDDEEEEEGV VEGVSRGQIG HGHEDEDEND HERAKRPRKG  360
SCFSGSSHKM LMQQLSSEVS GVIQDVSKSP WEKKQWMKAR LIQLEQQQVN YQYQSFELEK  420
QRLKWVKYSS KKERDMERAK LGNERRRLEN ERMLLLVRQK ELELLDLHHQ QQQQHQQQNS  480
SNKRSDLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	6e-73	Trihelix family protein