PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0468431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 358aa    MW: 40714.2 Da    PI: 7.275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0468431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             k  lC f+ + G+C  G +CkF+H+
  RcHm_v2.0_Chr3g0468431  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                             6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPKPD LSKTAAKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNINKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYI LKSQMKALLE EETEKIPIEE EIEDQRARLK TSTPMTPELF  240
MQWKKKKIAE RDAGLASKMA ERAKNDCMSG RELFLSDSTL FVDDAEASEK YQREKESEVA  300
EKKVSNNANG GGPNVADGDA KATNMDDSVE DDDLDINELN ELEASLSKVT IQEPGTSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-159C3H family protein