PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0463761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 311aa    MW: 35402.1 Da    PI: 7.4175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0463761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-082872345
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             WT+eE +++ +a +++ ++   +W+++a+ ++ g+t  +++  + 
  RcHm_v2.0_Chr3g0463761 28 EWTAEENKRFENALALYDKDtpdRWHKVASWIP-GKTVGDVIKQYK 72
                            5********************************.***999988775 PP
2Myb_DNA-binding45.22.1e-14137181347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  RcHm_v2.0_Chr3g0463761 137 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 181
                             8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MYRGIEVLSP ASYLQTSNWL FQESKGAEWT AEENKRFENA LALYDKDTPD RWHKVASWIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YSSNNSFTLE WADDQGFDGL KQYYSTVGGK  120
RGSSTRPSEQ ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRNFVTSRT PTQVASHAQK  180
YYIRQLTGGK DKRRSSIHDI TTVNLSDTKS GSQESNQSNT KSPPSQDHDS AVAVQSQQHA  240
KVSNKQQFDW KVSKEGPQMV FNSMNGNAII GPFFGISSHV PKIEEQDFFI GSTFHGSQFD  300
HHNVRFEMQY Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-124MYB family protein