PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0462431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 255aa    MW: 28839.4 Da    PI: 9.112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0462431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-10122162954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri ++f  L++l+P       +Kl+ +++Le+A++Y+k L
  RcHm_v2.0_Chr3g0462431 122 ARERRHRISERFKILQSLVPGG-----TKLDTVSMLEEAIQYVKFL 162
                             699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MTTSHSLIQN HPNKNTKLIQ NLYPFAFFIS LYIYHRTVPI TVNPYQVEPN KLGLFAKMEY  60
YFPASSDGSN FSSSSVITNT NTNNININGG RNKDKMKKGT SGNDQKSKNK VKLSTDPQSV  120
AARERRHRIS ERFKILQSLV PGGTKLDTVS MLEEAIQYVK FLKSQIWLHQ TMINFAGDDD  180
NQYYDHDPTS GNVFQLPVHH GQPVDPPHQQ ALCYGQNSFV GTSSVQPSVP VMPEYSCFQG  240
QEATPNIEAY MKYYS