PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0460501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 871aa MW: 96230.9 Da PI: 7.0237

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0460501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56	7.1e-18	324	423	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k l+ sd+++ grlvlpk +ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F+ RcHm_v2.0_Chr3g0460501 324 FEKMLSASDAGRIGRLVLPKACAEAYfpSISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFS 409 89************************666677788***********99899999999.******************* PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 +++ e++l +++++ RcHm_v2.0_Chr3g0460501 410 RME-PEGKLIMGFRK 423 876.77777777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence
MDPSACMNAY CGSSSSIEWK KGWALRSGRF ANLCHKCGTA YEESLFCDVF HSKESGWREC 60 AQCGKHLHCG CIASRSLLDF LDSGGVKCKH CTKNSEPHPI ASDEKPDGPG ISKISDLKLA 120 PSDNQLDSNN VDKVKLMQME NNKECNGLRN LLQSQNNETV GLLQKMKQDD VPAPVVEIGG 180 TSLSVFNQTS NVSSESSKPE IYKANLGIND IYESLPHTNL SMSLGAPAGY ANPFPGIGVD 240 EHARTSSLFL QGARSRHLLP KPPKLALATG LEENSTMASQ ARVARPPAEG RGRNQLLPRY 300 WPRITDQELQ QISGDSNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PSISQPEGLP 360 LRIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MEPEGKLIMG 420 FRKASNSVAM QSTKGMDPHL SALPKQLTAA TGDPSWHKSE KHEIRTREGL LLQSLVVPER 480 KRTRNIGSKS KRLLIDSQDA LELKLTWEEA QDLLRPPPAV KPSTVMIEDL EFEEYEEPPV 540 FGKRSIFIVR ATGEHEQWAQ CDGCSKWRRL PVDVLLPSKW MCTDNVWDQN RCSCSAPDEL 600 TPRELESFLR LSKEFKKRRM ATNHRPIQEH ESSGLDALAN AAILGDNVAD PGTASVATTT 660 KHPRHRPGCS CIVCIQPPSG KGKHKPSCTC QVCMTVKRRF KTLMINKKKR QSEREAEIAC 720 RNQLAWGPRD EAEVDSTSRH VSSHLDPSDN EAKSPNESES KSQLKLAESG KGKLDLNCHP 780 GREVDLPAGP SQLSMMSLLQ VATLPLQSYL KQTGLTSLVT EQQTSSTSPV PLQATEGNEE 840 QLNEDQCVVS VVQDGESGGD ERQDQSQEDP L

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence

MDPSACMNAY CGSSSSIEWK KGWALRSGRF ANLCHKCGTA YEESLFCDVF HSKESGWREC  60
AQCGKHLHCG CIASRSLLDF LDSGGVKCKH CTKNSEPHPI ASDEKPDGPG ISKISDLKLA  120
PSDNQLDSNN VDKVKLMQME NNKECNGLRN LLQSQNNETV GLLQKMKQDD VPAPVVEIGG  180
TSLSVFNQTS NVSSESSKPE IYKANLGIND IYESLPHTNL SMSLGAPAGY ANPFPGIGVD  240
EHARTSSLFL QGARSRHLLP KPPKLALATG LEENSTMASQ ARVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QISGDSNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PSISQPEGLP  360
LRIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MEPEGKLIMG  420
FRKASNSVAM QSTKGMDPHL SALPKQLTAA TGDPSWHKSE KHEIRTREGL LLQSLVVPER  480
KRTRNIGSKS KRLLIDSQDA LELKLTWEEA QDLLRPPPAV KPSTVMIEDL EFEEYEEPPV  540
FGKRSIFIVR ATGEHEQWAQ CDGCSKWRRL PVDVLLPSKW MCTDNVWDQN RCSCSAPDEL  600
TPRELESFLR LSKEFKKRRM ATNHRPIQEH ESSGLDALAN AAILGDNVAD PGTASVATTT  660
KHPRHRPGCS CIVCIQPPSG KGKHKPSCTC QVCMTVKRRF KTLMINKKKR QSEREAEIAC  720
RNQLAWGPRD EAEVDSTSRH VSSHLDPSDN EAKSPNESES KSQLKLAESG KGKLDLNCHP  780
GREVDLPAGP SQLSMMSLLQ VATLPLQSYL KQTGLTSLVT EQQTSSTSPV PLQATEGNEE  840
QLNEDQCVVS VVQDGESGGD ERQDQSQEDP L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein