PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0454621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 338aa    MW: 39606.4 Da    PI: 4.5644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0454621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.13.4e-23111442128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diy.kvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksg 81 
                             p+G+rFhPtd elv+++L++k+++++  + +  i e+ d y + ePw +  +   ++++e + +yf++kr k++++gkr  r++ sg
  RcHm_v2.0_Chr3g0454621  11 PKGMRFHPTDLELVDYFLHNKADADEKGCYSSlIYECnDFYgEKEPWVIWdMyggSTYEEGEPLYFYTKRIKQNSNGKRFARKVGSG 97 
                             89********************99996665555999978773569**99633444444566688*********************** PP

                     NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +W+   +++ + +  +++++g+ + + + kg   +g++  W+mhey+ 
  RcHm_v2.0_Chr3g0454621  98 TWSGEYSKEVLAADdGKTKIGTMRNFRYEKG-CDSGQNGAWLMHEYES 144
                             ***8877555444467788********9865.55789*********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MNMAPTMQRY PKGMRFHPTD LELVDYFLHN KADADEKGCY SSLIYECNDF YGEKEPWVIW  60
DMYGGSTYEE GEPLYFYTKR IKQNSNGKRF ARKVGSGTWS GEYSKEVLAA DDGKTKIGTM  120
RNFRYEKGCD SGQNGAWLMH EYESEFDKNG EDDYVICVLR KNPRKAPALL QPDQRDIEST  180
KKSSVNDKKR KRMKSDDVVD HQDHQQRKLE KQQKDDRELI KIEEEERKEE SYDEQGRSSC  240
TQLPYHHDQD NNIDYPDNHN FYLDYYFPEL FGNNYDDGVT IDELIGPISD DSVYYKSIPF  300
QDQLYHGDDD SFNFVDYSDG GVSQLPNDQH TVDYLGNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188211KKRKRMKSDDVVDHQDHQQRKLEK
2189212KKRKRMKSDDVVDHQDHQQRKLEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-19NAC family protein