PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0450351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 300aa    MW: 33098.4 Da    PI: 6.2506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0450351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-184695255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  RcHm_v2.0_Chr3g0450351 46 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 95
                            799******.7*********32...35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEFQFQLQKQ ISFPAAAQSH RASGIPKSSK GNKLKGGRNR SNNTNKFVGV RQRPSGRWVA  60
EIKDTTQKIR MWLGTFETAE EAARAYDEAA CLLRGNNTRT NFITHVSLDS PLASRIQNLL  120
NTKKPGSNCE QQIQMTSSTS SSTASHPPTA KSTSSTSTSA SSTSKSCLSS EVSNQESSHH  180
QFSDDVYKPD LSNCNQLPFD QLSTSTTTSS NSYQPNISWV DGFSFAQQMF ATPKDEAALS  240
SELTSADERG DSDELLEFER MKVERQISAS LYAMNGVQEY MDTVHDANEA LWDLQPFCAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-28ERF family protein