PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0448721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 276aa    MW: 32127.9 Da    PI: 6.0501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0448721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-183277348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +WT+eEd+ll ++++++G g W++I++  g++R++k+c++rw++yl
  RcHm_v2.0_Chr3g0448721 32 PWTKEEDQLLRKCIEKYGEGKWHRIPHLAGLNRCRKSCRLRWLNYL 77
                            7*******************************************97 PP
2Myb_DNA-binding46.86.7e-1583127147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++ +eE el++++ ++lG++ W+++a++++ gRt++++k++w+ +
  RcHm_v2.0_Chr3g0448721  83 RGSFEQEEVELIIQLQRLLGNR-WSLVAARLP-GRTGNDVKNYWNCH 127
                             899*******************.*********.***********977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MKIHIYITSN THCRDSTTQN CNIREREMGG IPWTKEEDQL LRKCIEKYGE GKWHRIPHLA  60
GLNRCRKSCR LRWLNYLRPN IKRGSFEQEE VELIIQLQRL LGNRWSLVAA RLPGRTGNDV  120
KNYWNCHLSK KLNAQETHGD HQKINHAGNN NLQVIRPQAS KYASSNSKRS MISSTLEDQT  180
CQALEECSNA SVAMLCNIDK DQGQISQIVE REDSNNLCVE EEHEGNNDFM GDLGMVDLDQ  240
FEQVIEQYDQ EFNNKNKKWE WDDSILDMDL WVTDSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.12e-46MYB family protein