PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0176081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 707aa    MW: 78109.2 Da    PI: 6.2039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0176081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.62.3e-1343427061374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfs 85 
                             lv+lLl+cAeav+++d  la+++L +l++ +s  gd+mqR+aa+fteAL+arla + ++  +al+p++ s+    s e l+++++ +
  RcHm_v2.0_Chr2g0176081 342 LVHLLLACAEAVAKEDYMLARRYLHHLNQVVSALGDSMQRVAACFTEALSARLAATLTTNPSALAPKPFSPFPpnSLEILKIYQIVY 428
                             68*****************************************************99999999988888765455************ PP

                    GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                             +++P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+      e+++etg+ L+++A +l
  RcHm_v2.0_Chr2g0176081 429 QACPYVKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGP----CLEAVKETGRCLTELAISL 511
                             ****************************************************************....******************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfef++ v ++ledl++++++ + gEalaVn v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfle
  RcHm_v2.0_Chr2g0176081 512 HVPFEFHA-VGEQLEDLKPHMFNRRIGEALAVNTVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLE 591
                             ********.7*******************************9..44444....5********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk+vpls +a++q k ll  ++ 
  RcHm_v2.0_Chr2g0176081 592 ALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGAERTERHERLEKWRKIMEGKGFKSVPLSANAVTQSKILLGLYSC 678
                             *************************************************************************************** PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             dgyr+ e++g+l+lgW+dr+++++SaWr
  RcHm_v2.0_Chr2g0176081 679 DGYRMTEDKGCLLLGWQDRSIMAASAWR 706
                             ***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MMMNSHCGSM GSIKSENSCS DFKPTSPNES TIMSEPPKKA TSTTTTALSS SDMMNHSTTS  60
LTPPSLNFPA LKFELEGDVE VESPDHSIWE SLFSEQFDTD FMVLSPVANT NNNLPNSPRT  120
FGYNGQAIQG QTSFSGCSPP RFGSPPLGAF SRDNSKGKGL SPLRRVFNSP VNYIQQEPEN  180
LQSLPPASIE DFLDDYQRDG FVAAYSDPNL NPTTTCTSKM SGGGSNLSSQ SYHNPMVSMD  240
CNMSTTMQNP SRFSRSVSET SLVTACNSQM TQESRGGGAY QQMGSNCSAP LSQQLMHERQ  300
QEKQHMQMHP QKQHHNNHNY NLMAPSLPPV APEPEQDSGL QLVHLLLACA EAVAKEDYML  360
ARRYLHHLNQ VVSALGDSMQ RVAACFTEAL SARLAATLTT NPSALAPKPF SPFPPNSLEI  420
LKIYQIVYQA CPYVKFAHFT ANQAIFEAFE SEERVHVIDL DILQGYQWPA FMQALAARSG  480
GAPFLRITGV GPCLEAVKET GRCLTELAIS LHVPFEFHAV GEQLEDLKPH MFNRRIGEAL  540
AVNTVNRLHR VPGNCLGNLL AMIRDQAPNI VTLVEQEASH NGPYFLGRFL EALHYYSAIF  600
DSLDATFPPD SAQRAKVEQY IFAPEIRNIV ACEGAERTER HERLEKWRKI MEGKGFKSVP  660
LSANAVTQSK ILLGLYSCDG YRMTEDKGCL LLGWQDRSIM AASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-98GRAS family protein