PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0175731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 278aa    MW: 31753.1 Da    PI: 9.521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0175731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003791113223
                             EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                             +C+ C+++++++ +L  H +  H
  RcHm_v2.0_Chr2g0175731  91 SCSVCSRVYPTSRLLSIHVSEaH 113
                             6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MAMELELGFP YWKALRRKFG PESPFFASGN LERELLVKQL ALDLTEDEKR ELRNFVDEEG  60
RGVFCPIVGC GAKLTCLEDF EDHYNARHTA SCSVCSRVYP TSRLLSIHVS EAHSSFFQAK  120
VARGDPMYEC LVEGCDLKLK TYKSRQQHLV DKHKFPTSFE FFKKAPPSKK QRQKKQRKQA  180
YVKRADASDM EVENEVIDDI DHSRKQKKKN QQKQANLKKP DVSNMDVGNE DINNLVTAVS  240
KLSTSDSSPS SISFGRRPTR GLTFVPRAVQ REKKPDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-93C2H2 family protein