PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0164981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 330aa    MW: 37320.4 Da    PI: 8.1376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0164981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-191865148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd+ll + v+++G g+W+++ar+ g++R++k+c++rw +yl
  RcHm_v2.0_Chr2g0164981 18 KGPWTPEEDKLLSEHVNLHGEGRWSSVARCTGLNRSGKSCRLRWVNYL 65
                            79********************************************97 PP
2Myb_DNA-binding51.22.9e-1671115147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  RcHm_v2.0_Chr2g0164981  71 RGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115
                             7888******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MASVLVGWGG VAEKGWRKGP WTPEEDKLLS EHVNLHGEGR WSSVARCTGL NRSGKSCRLR  60
WVNYLRPGLK RGQLTPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE  120
KCTEKQQKRK AQILKEKQQQ QQQDIKDDQE NKKIKSANSS TSPQGHSEAL TCSSELRNNN  180
MIPDELQQLA QPTQEMNVVF ASPNMEEAQC LPALVSMNQL GGTTSAVEST IRSSENTAMI  240
NIESEDDQGF WGQLWNLDDD HGHVQANRVG YHTSYSNSEC RNSLALQQNQ AITATSSGAI  300
RNEATRASNF SWGEDIRSYK YFYSGSGHTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-64MYB family protein