PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0153561

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 836aa MW: 96237.7 Da PI: 6.8328

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0153561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.5	9.8e-28	77	164	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnH RcHm_v2.0_Chr2g0153561 77 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---SSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKEHNH 160 5**************************************999888...77888899*************************** PP FAR1 88 elap 91 el p RcHm_v2.0_Chr2g0153561 161 ELLP 164 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MMDKNQRLVG MLVDGQDNMN DGRVNENMNM VPLVEEAQNS GGGIIGSPKR DVQVFEGDAD 60 FEPCNGIEFD SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES 120 DSGSSRRPTV KKTDCKASMH VKRRADGKWI IHEFIKEHNH ELLPALAYHF RIHRNVKLAE 180 KNNMDILQAV SERTRKMYVE MSRQSGGYQY TGFLRTDTKY QFDKCLHLGL DEGDAQVMLE 240 YFKRIQKDNP NFFYAIDLNE EQRVRNLFWV DAKSRSDYKS FNDVVSFDTS YIKINEKLPF 300 APFVGVNHHF QPMLLGCALI ADDSKATFLW LLTTWVRAMG GLHPKVIISD QDDNLKAAIE 360 EVFQDARHCF SLWNILEKIP EVLAPVIKRH ENFLSKFHKC IFKSWTEEHF DMRWWKMVTR 420 FELQDDVLIH SLYDDRKRWV PSYLGDTFLA GMCTTQRSES MNSFFDKYIH KKITLKEFVK 480 QYGTILQNRY DEEAIADFDT WHKQPALKSP SPWEKQMSTV YTHAVFRKFQ VEVLGVVGCQ 540 PKKEHEDGST ATFRVQDCEK EEYFMVTWTE TKSEVSCSCR MFEYKGFLCR HSLIVLQICG 600 LSSIPLHYIL KRWTKDAKSS QSILEGSELV RTRVQRYNDL CKRAIELSEE GSLSEETYNI 660 AFRTLVEALK NCVNVNNSNA TVVDLSSSVH GIREAEEENQ GSLTAKPSRK RNTNRKRKVQ 720 AEQDVILGEA QDSLQQMENL SSDGMALSGY YGAQHGLVQL NLMEPPHDSY YVNQESMQGL 780 GQLNSIAPSD DGFFGTQQIH GLGQLDFRPS SSFSYSLQDE PHLRSAELHG SSSRHS

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MMDKNQRLVG MLVDGQDNMN DGRVNENMNM VPLVEEAQNS GGGIIGSPKR DVQVFEGDAD  60
FEPCNGIEFD SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES  120
DSGSSRRPTV KKTDCKASMH VKRRADGKWI IHEFIKEHNH ELLPALAYHF RIHRNVKLAE  180
KNNMDILQAV SERTRKMYVE MSRQSGGYQY TGFLRTDTKY QFDKCLHLGL DEGDAQVMLE  240
YFKRIQKDNP NFFYAIDLNE EQRVRNLFWV DAKSRSDYKS FNDVVSFDTS YIKINEKLPF  300
APFVGVNHHF QPMLLGCALI ADDSKATFLW LLTTWVRAMG GLHPKVIISD QDDNLKAAIE  360
EVFQDARHCF SLWNILEKIP EVLAPVIKRH ENFLSKFHKC IFKSWTEEHF DMRWWKMVTR  420
FELQDDVLIH SLYDDRKRWV PSYLGDTFLA GMCTTQRSES MNSFFDKYIH KKITLKEFVK  480
QYGTILQNRY DEEAIADFDT WHKQPALKSP SPWEKQMSTV YTHAVFRKFQ VEVLGVVGCQ  540
PKKEHEDGST ATFRVQDCEK EEYFMVTWTE TKSEVSCSCR MFEYKGFLCR HSLIVLQICG  600
LSSIPLHYIL KRWTKDAKSS QSILEGSELV RTRVQRYNDL CKRAIELSEE GSLSEETYNI  660
AFRTLVEALK NCVNVNNSNA TVVDLSSSVH GIREAEEENQ GSLTAKPSRK RNTNRKRKVQ  720
AEQDVILGEA QDSLQQMENL SSDGMALSGY YGAQHGLVQL NLMEPPHDSY YVNQESMQGL  780
GQLNSIAPSD DGFFGTQQIH GLGQLDFRPS SSFSYSLQDE PHLRSAELHG SSSRHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein