PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0153551

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 816aa MW: 93581.5 Da PI: 6.7587

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0153551	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.1e-22	142	225	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +Y+eYA++vGF v++ +s++sk++g++++ ++ Cs++ k+e+ +++ +r+ + tgCka l++kk++++kw+++++++eHnHe RcHm_v2.0_Chr2g0153551 142 YYREYARSVGFGVTIIASRRSKKTGKFIDIKLACSRYRKQEDGDTE----NRRIQLLSTGCKAGLQMKKRENEKWYIHSFVKEHNHE 224 9***********************************99998777....77788899**************************9 PP FAR1 89 l 89 + RcHm_v2.0_Chr2g0153551 225 M 225 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence
MEIDLELPSC EQGKLETRLD KDVNIVETNV EKKSEHVKEA HGLRTNESVS GVEDQDDANN 60 VEVRVVDKGV VNTVDATDEM NVEKSGEAVG EARGSSANKS ASDFQGQDDV NNVVANVVDK 120 GFVVREPENG LEFETKEDAY SYYREYARSV GFGVTIIASR RSKKTGKFID IKLACSRYRK 180 QEDGDTENRR IQLLSTGCKA GLQMKKRENE KWYIHSFVKE HNHEMGDGFI NALGGRNKRP 240 ATVACQKKGL QFTLDKEDVQ VMFEQLMCMQ DENPNFFYAI EFDNDKRLRS VFWVDANGRR 300 DYNSFCDVVL FDTHYVRNNY KIPLVPIVGV NHHFQYILLG CALLGDETTA AFVWLMRTWL 360 KAVGGQAPRV VITDQEKYLK EAVADVFTDA CHRFCLWHVL TRIHDNVGSI NEDAIFQAKL 420 NKWIYRSWTV QQFEKRWWKL INRFELRENE RLCLFSLYED RKYWAPAYMQ DSCSAGMSTV 480 ERSGSITSFF DRYISQEAMV KDFMEQYKTF LKDRYDMEAN AAFEAQNKQP ELRSLSPFEK 540 QMSTIYTDTI FRKFQGEVLG VDSCHLHKEG QDEATVIFRV DDLEERQNFI VAWNEPELRV 600 CCLCHSFEYK GFLCRHALLV LHMSGVSRIP SHYILKRWMK DARVRHTVSD VSKRLNYRVQ 660 RFNDLCKLAV KLGEEGSLSP ETYQIAFQAL DEVLKQCVNV NNSVRGVSVP NPSSIHGSND 720 LEEGNHSGGM AKLSKKKKTH RKRKGQTEPD GTPIRLQDSY QQMELMNSRA HNLDSCHVPQ 780 QELQGELGSK GRAQDSCYGA QQSARNGTVG VSISYL

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence

MEIDLELPSC EQGKLETRLD KDVNIVETNV EKKSEHVKEA HGLRTNESVS GVEDQDDANN  60
VEVRVVDKGV VNTVDATDEM NVEKSGEAVG EARGSSANKS ASDFQGQDDV NNVVANVVDK  120
GFVVREPENG LEFETKEDAY SYYREYARSV GFGVTIIASR RSKKTGKFID IKLACSRYRK  180
QEDGDTENRR IQLLSTGCKA GLQMKKRENE KWYIHSFVKE HNHEMGDGFI NALGGRNKRP  240
ATVACQKKGL QFTLDKEDVQ VMFEQLMCMQ DENPNFFYAI EFDNDKRLRS VFWVDANGRR  300
DYNSFCDVVL FDTHYVRNNY KIPLVPIVGV NHHFQYILLG CALLGDETTA AFVWLMRTWL  360
KAVGGQAPRV VITDQEKYLK EAVADVFTDA CHRFCLWHVL TRIHDNVGSI NEDAIFQAKL  420
NKWIYRSWTV QQFEKRWWKL INRFELRENE RLCLFSLYED RKYWAPAYMQ DSCSAGMSTV  480
ERSGSITSFF DRYISQEAMV KDFMEQYKTF LKDRYDMEAN AAFEAQNKQP ELRSLSPFEK  540
QMSTIYTDTI FRKFQGEVLG VDSCHLHKEG QDEATVIFRV DDLEERQNFI VAWNEPELRV  600
CCLCHSFEYK GFLCRHALLV LHMSGVSRIP SHYILKRWMK DARVRHTVSD VSKRLNYRVQ  660
RFNDLCKLAV KLGEEGSLSP ETYQIAFQAL DEVLKQCVNV NNSVRGVSVP NPSSIHGSND  720
LEEGNHSGGM AKLSKKKKTH RKRKGQTEPD GTPIRLQDSY QQMELMNSRA HNLDSCHVPQ  780
QELQGELGSK GRAQDSCYGA QQSARNGTVG VSISYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	740	KKKKTH
2	736	741	KKKKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1 family protein