PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0152951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 918aa    MW: 101532 Da    PI: 6.4465
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0152951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.4e-24133234199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  RcHm_v2.0_Chr2g0152951 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 217
                             99*****************************8544444..48********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  RcHm_v2.0_Chr2g0152951 218 LFI--WNEKNQLLLGIRRA 234
                             ***..8899999****997 PP
2Auxin_resp118.55.4e-39259342183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  RcHm_v2.0_Chr2g0152951 259 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWSNSHWRSVK 342
                             79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    
MRLSSSSSSS GFNNHQPQEG EKKCLNSELW HACAGPLVSL PALGSRVVYF PQGHSEQVAA  60
STNKEVDAHI PNYPNLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPQ EQKDVYLMPA  120
ELGNPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQQPPA QELIARDLHD  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGISDLDS VRWSNSHWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTFPM YPSPFPLRLK RPWPSGMPSF HALKDGDMGL NAPLMWLQGG VGDPGMQSLN  420
FQGFGVTPWM QPRLDASMAG LQPDVYQAMA AAALQEMRAV DAKCSSQSLL PFQQSSNVSN  480
GPTAMLQRHS LPQSQSQNTF LQSFQENQAP ASQLLQQQLR YHPYNNDQRQ QQQQHHQQQL  540
HQHQHQQQQQ QLQQQHLQQS QNMHQFSVQQ QIPNVMSSLS NFATQSQSAS LQAIPSQTQQ  600
QSFPESVGNA ISSSDVPPIH SILGSLSQDG ASQLLNLSGS NTGISSTLLP KVESQLSSGA  660
AQCVLPQVDQ LGTPQSNISE LTALPPFPGR EYSFQGATDP QSNLLFGVNI DASSLMLQNG  720
IPNLRNIGSG TDSLSMPFGA SNYTSATGND YPLNSDMTTS SCVDESGFLP SSENVDQVNP  780
PTRTFVKVHK SGSFGRSLDI SKFSSYDELR SELGSMFGLE GQLEDPQRSG WQLVFVDREN  840
DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLNRVA SVPSQKLSNG SNTCDDYVSR  900
QDLRNSSNGI ASLGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein