PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0137821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 391aa MW: 44916.1 Da PI: 4.4804

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0137821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.7e-15	157	241	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ r ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk++ + t ++ s+++yf++++ RcHm_v2.0_Chr2g0137821 157 WTEHETFVLLDAWGDRFLRRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERVKFAE-TGGAISKWVYFKKMD 241 ***********************************762678*****************999998.689999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDDTEDDARY PPNVYGANHP QGYDSAQPPK LPARSGSFSR PVSHYDDDED DEDEELGEEE 60 GHNGQNGYPS VHKDVGDDDD DDDEEGDDDE DEDDEEDDKS KVFKRIDDDD LQKHPKKRKL 120 KSLISSYEFA PRVPAPLVPA LPAPRQSHGG RNALTDWTEH ETFVLLDAWG DRFLRRGKKS 180 LRSEEWQEVA EKVSEVSKIE RTDTQCRNRL DTLKKKYKKE RVKFAETGGA ISKWVYFKKM 240 DMLMSSPQQQ AGLSCGLDSG EYVFMNPRVY LNRANGLDEM RDSPGNSESA EGVEDESDGL 300 PPKKRRFGRD NDERSSFRLL ADSIQKFSDI YEKIEKSKRQ QMVELEKMRM DFHRDLEMQK 360 RQIMERAQAE IAKMRQADDE ENDVSAENAS G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDDTEDDARY PPNVYGANHP QGYDSAQPPK LPARSGSFSR PVSHYDDDED DEDEELGEEE  60
GHNGQNGYPS VHKDVGDDDD DDDEEGDDDE DEDDEEDDKS KVFKRIDDDD LQKHPKKRKL  120
KSLISSYEFA PRVPAPLVPA LPAPRQSHGG RNALTDWTEH ETFVLLDAWG DRFLRRGKKS  180
LRSEEWQEVA EKVSEVSKIE RTDTQCRNRL DTLKKKYKKE RVKFAETGGA ISKWVYFKKM  240
DMLMSSPQQQ AGLSCGLDSG EYVFMNPRVY LNRANGLDEM RDSPGNSESA EGVEDESDGL  300
PPKKRRFGRD NDERSSFRLL ADSIQKFSDI YEKIEKSKRQ QMVELEKMRM DFHRDLEMQK  360
RQIMERAQAE IAKMRQADDE ENDVSAENAS G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	KHPKKRK
2	175	219	RRGKKSLRSEEWQEVAEKVSEVSKIERTDTQCRNRLDTLKKKYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-79	Trihelix family protein