PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0133601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 296aa    MW: 32219.1 Da    PI: 10.4253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0133601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18151201256
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr ++ +gr+ AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  RcHm_v2.0_Chr2g0133601 151 NYRGVRKRP-WGRFSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 201
                             59*******.**********32....25**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MSFKATDTVP FLRQPVSFRS PNTFRLLTEA ASFYESYLSG QFSVPPPSVP NQLKLVNQPS  60
HSHVSADDTP LLAVNANVAE SETEPPPVLD GIAAVVGEHV LFGGKKAANN EVNTENTQVS  120
DFVNLSLRFG GSETSKTAAD KDMGNVSVQK NYRGVRKRPW GRFSAEIRDR IGRCRHWLGT  180
FDTAEEAARA YDSAARRLRG AKAQTNFQIP SVFPVSYDSA SSSASVNNNA AEKKRKVSRS  240
RGAKPKSVRE TNSVVVTSVA QLFSQTPIPR TSVIGNRNPN LELDLKLGMN FGCRGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-27ERF family protein