PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0126301

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 466aa MW: 52524 Da PI: 5.5878

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0126301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.8e-19	218	268	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge RcHm_v2.0_Chr2g0126301 218 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 268 59****9.******955...5************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MATAKGSGES NNETRMETSR DCDLDKGKER DFFLESCQWK PVFDEASMSH RPLKKIKSPE 60 RSHQHQSSSA FPPEFHIPSS PPRSSSDTSS ITSCSPFSSR IVFPFAFDGS LPQQQQPIQF 120 PHQFQTTGLQ PIQFPPTTNV VEQQQQQQQN QQQMISFASQ QQQMISWRQQ QQQQMLQYWS 180 DALNLSPRGR MMMMNRFGGA NSSGGIRPAA MPVSTSKLYR GVRQRHWGKW VAEIRLPRNR 240 TRLWLGTFDT AEDAAMAYDR EAFKLRGENA KLNFPELFLN KDKDNNNAAA VSTAPSSTET 300 ASVPTQQVSK PSRHRGKPLL KDLDLQLQVP ISDRETIAPP PAPYSHPQED DDTGESDLAN 360 ASQQSEVENH GEGGGIISDA PTQEMAWGEM AEAWMNAIPQ GWGPGSPVWD DLELDMTSNN 420 LVLQSHDYHH FTANNPNRHE LPQQEDNSCS ASSSYPMQPF FWKDQD

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MATAKGSGES NNETRMETSR DCDLDKGKER DFFLESCQWK PVFDEASMSH RPLKKIKSPE  60
RSHQHQSSSA FPPEFHIPSS PPRSSSDTSS ITSCSPFSSR IVFPFAFDGS LPQQQQPIQF  120
PHQFQTTGLQ PIQFPPTTNV VEQQQQQQQN QQQMISFASQ QQQMISWRQQ QQQQMLQYWS  180
DALNLSPRGR MMMMNRFGGA NSSGGIRPAA MPVSTSKLYR GVRQRHWGKW VAEIRLPRNR  240
TRLWLGTFDT AEDAAMAYDR EAFKLRGENA KLNFPELFLN KDKDNNNAAA VSTAPSSTET  300
ASVPTQQVSK PSRHRGKPLL KDLDLQLQVP ISDRETIAPP PAPYSHPQED DDTGESDLAN  360
ASQQSEVENH GEGGGIISDA PTQEMAWGEM AEAWMNAIPQ GWGPGSPVWD DLELDMTSNN  420
LVLQSHDYHH FTANNPNRHE LPQQEDNSCS ASSSYPMQPF FWKDQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20880.1	1e-46	ERF family protein