PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0120581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 158aa    MW: 18370 Da    PI: 9.7747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0120581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-055276223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                            kC    C ++F+ ksnL++H +  H
  RcHm_v2.0_Chr2g0120581 52 KCDyeGCLQTFTKKSNLRQHVKAvH 76
                            688889**************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MKQFSNEQCL KAHIQSCHQH ITCEICGTKQ LKKNIKSHLR THEEGGSMER IKCDYEGCLQ  60
TFTKKSNLRQ HVKAVHLENK PFVCCFPGCG KRFAYKHVKD NHEKSGCHVH AHGDFEEADE  120
KFRSRPRGGR KRQCPTVEML VRKRVSPSKQ SRQGYENF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-67C2H2 family protein