PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0108741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 593aa MW: 63925.5 Da PI: 5.9888

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0108741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	220	264	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e RcHm_v2.0_Chr2g0108741 220 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 264 79****************************************985 PP
2	QLQ	59.1	1.3e-20	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyL+an+PvP++Ll +++k RcHm_v2.0_Chr2g0108741 155 GPFTPSQWIELEHQALIYKYLNANAPVPSNLLIPLKK 191 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MDFGVVGGMD MDCLMGPEPG EGATAHSHVS GPETKPGHGS GLSFKQQRSW PVEDDWRVSK 60 PDDMSSPRTM PLPQGPPPQL LMRSSSLAPP RQEQMLSFAS NKSEVTFLSK DGGASSDFAY 120 YQRMPTPSSP YARNAGYGSG SLNANMHGLY AAAKGPFTPS QWIELEHQAL IYKYLNANAP 180 VPSNLLIPLK KALYPYGLSG PSPNSLGWGS FHLGYSGNAD PEPGRCRRTD GKKWRCSRDA 240 VADQKYCERH INRGRHRSRK PVEGQTGHGA SRRANSKEVA PPVTSSMPTS VSGASQPQFK 300 SLEPPPADTA AANSSVDAFA NRMQDPQGLS VMSASSIKPE SNASSFNIPK RDFPMEESSL 360 SEFGLVSTDS LLNPSHRSSY IPKDFGGSFL DFTDQETQDQ NLLHQFIDDW PKDQSSQSVV 420 TWPEDLKSDW TQLSMAIPMA SDFSSSSSSP TQDKLGLSPL RLSREFEPTQ NLGVSNDQSE 480 PTDQQTNWVP ISWRSSMGGP LGEVLTNTSS CVNSKNSSSS NTSPINLLNE GWDGSSQLES 540 SPTGVLQKST FCSLSNSSSG SSPRADNKKS RDGASLYDDV LGSTLASSSV PSL

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MDFGVVGGMD MDCLMGPEPG EGATAHSHVS GPETKPGHGS GLSFKQQRSW PVEDDWRVSK  60
PDDMSSPRTM PLPQGPPPQL LMRSSSLAPP RQEQMLSFAS NKSEVTFLSK DGGASSDFAY  120
YQRMPTPSSP YARNAGYGSG SLNANMHGLY AAAKGPFTPS QWIELEHQAL IYKYLNANAP  180
VPSNLLIPLK KALYPYGLSG PSPNSLGWGS FHLGYSGNAD PEPGRCRRTD GKKWRCSRDA  240
VADQKYCERH INRGRHRSRK PVEGQTGHGA SRRANSKEVA PPVTSSMPTS VSGASQPQFK  300
SLEPPPADTA AANSSVDAFA NRMQDPQGLS VMSASSIKPE SNASSFNIPK RDFPMEESSL  360
SEFGLVSTDS LLNPSHRSSY IPKDFGGSFL DFTDQETQDQ NLLHQFIDDW PKDQSSQSVV  420
TWPEDLKSDW TQLSMAIPMA SDFSSSSSSP TQDKLGLSPL RLSREFEPTQ NLGVSNDQSE  480
PTDQQTNWVP ISWRSSMGGP LGEVLTNTSS CVNSKNSSSS NTSPINLLNE GWDGSSQLES  540
SPTGVLQKST FCSLSNSSSG SSPRADNKKS RDGASLYDDV LGSTLASSSV PSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-117	GRF family protein