PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0108241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 301aa    MW: 32714.2 Da    PI: 10.3419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0108241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11555146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                            +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  RcHm_v2.0_Chr2g0108241  5 KQKWTPEEEAALKAGVLKHGAGKWRTILSDKEfgailHLRSNVDLKDKWRN 55
                            79**************************999998***88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGAPKQKWTP EEEAALKAGV LKHGAGKWRT ILSDKEFGAI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRTTPTTK NDNSPLQVTT AVQSNEETAD AKPLASSGGK VQTTESKPPI  120
ARLDHLIFEA ITNLKEPRGS DRNTITTYIE DQYWAPSNLS KLLSTKLKHM TANGKLVKVK  180
HRYRIPPNSA TSEKRRNSST LLSEGKQKDS TRADKSVVSI LTKSQVDAEL TMIRSMTAQE  240
AAAAAAQAVA EAEAAIAAAE EAAREAEAAE AEAEAAQVFA KAAVKALKCR RLDLDMKLAH  300
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.13e-79MYB_related family protein