PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 208aa    MW: 22422.2 Da    PI: 9.0178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-2192142256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             +y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++ge
  RcHm_v2.0_Chr2g0105521  92 KYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFKTAEEAARAYDKAAIEFRGE 142
                             8********.**********82....48*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MSSHSGGLPK EQEHAIMVSA LKQVICGGGG GIASRSSGHS RPAVEGGSGT KKVVISISDG  60
DTCQVCRIDG CLGCEFFPPS KPDKGKRIKK GKYRGVRQRP WGKWAAEIRD PRRAARVWLG  120
TFKTAEEAAR AYDKAAIEFR GEKAKLNFPL SSEAGTTSAA STTQSMETGE VNQVNASSVK  180
SANQEEGQSS DVKDEDIDRF IWEMLKDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-23ERF family protein