PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 181aa    MW: 19723.4 Da    PI: 9.7035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1996147156
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             s y+GVr+++  g+WvAeIrd       r  r +lg+f taeeAa+a++ a+++++g+
  RcHm_v2.0_Chr2g0105501  96 SNYRGVRQRP-GGKWVAEIRDrR-----RaVRLWLGTFQTAEEAARAYDTAALEFRGA 147
                             57********.9*********33.....47*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MQSHSGCLPK EQEHAVIVSA LKWVIRGGTQ PPPPPSTPNS ATSSLPPTGG TNQVVIPFLD  60
CVTCQVCNMK MDDCLGCGLF PPSEEDKGKG KKMKTSNYRG VRQRPGGKWV AEIRDRRRAV  120
RLWLGTFQTA EEAARAYDTA ALEFRGADRA KLNFPPSSDT GSTSGAMTDD PNKSSRRKQR  180
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-21ERF family protein