PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 264aa    MW: 29951.8 Da    PI: 6.3725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-1318109299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                             fk+    ++l+ g + +pk f+ +hg+  +e   + l+ +s  +W++ l  ++++g+++l+kGW eF+k   L+ g  +vF+ +g+ 
  RcHm_v2.0_Chr2g0103581  18 FKIV-LDSALRDGKIEIPKAFVMKHGNCLAE--SVLLKVPSRAEWRIGL--TRCDGEVWLEKGWPEFAKFYFLDHGYLLVFSCEGDy 99 
                             4444.3567778889**********876444..69999***********..**********************************99 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             s+f   v++f +
  RcHm_v2.0_Chr2g0103581 100 SSF--QVQIFTR 109
                             999..9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGETEEPSPF AAKSPSFFKI VLDSALRDGK IEIPKAFVMK HGNCLAESVL LKVPSRAEWR  60
IGLTRCDGEV WLEKGWPEFA KFYFLDHGYL LVFSCEGDYS SFQVQIFTRN TMEIDYPTNS  120
SLGEGEELED DDVSVEILDV VPSKKRGRRE LASLWPHKTM RTKSGDEAEV NSYPRGKTKD  180
QGVKHQREKR SYGTPSSLKN CQAEGGSMPT ASISLEANEH DVDTRDGAFL RATSFKYSNP  240
YLVVRMQKSY LSRYLVSFLN YLLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-20B3 family protein