PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 377aa    MW: 43789 Da    PI: 6.4511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1324116599
                             -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              +++ +++ ++l++p+++++++  ++ +e s  + l+ + g +We+++  +++ g +++ kGW+  +k   ++ + ++vF+++g+s+
  RcHm_v2.0_Chr2g0103481  24 SISEKTHRDNNLRVPRSYVKKYekKYGEELSNIVHLKLPCGTEWEIEV--TRHNGVFWFDKGWETLCKFYSIEYRYSLVFQYEGNSR 108
                             45667777888***********9977788999****************..**********************************999 PP

                             E..EEEEE-S CS
                      B3  90 felvvkvfrk 99 
                             f  +v +f++
  RcHm_v2.0_Chr2g0103481 109 F--KVNIFDR 116
                             9..9999997 PP
2B357.91.9e-18218314399
                             EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               + ps+  k+ +l+lp +fa +      ++s  ltl+ ++g   r+W+v +  +  ++r  +++GW+eFv++n+L+ gD++ ++l+
  RcHm_v2.0_Chr2g0103481 218 VPMCPSYIEKH-MLWLPSDFAMHVkH-LITNSGNLTLRVSEGsttRTWTVGM--KYEKERAKFQSGWSEFVQDNKLNHGDVCDLMLI 300
                             55666666665.6********66663.445666888888888889*******..555556779************************ PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             +++e  + vk+fr+
  RcHm_v2.0_Chr2g0103481 301 DKNELLFEVKIFRA 314
                             99999899999996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MSSPCWKIDQ RPKFSATPLS FHKSISEKTH RDNNLRVPRS YVKKYEKKYG EELSNIVHLK  60
LPCGTEWEIE VTRHNGVFWF DKGWETLCKF YSIEYRYSLV FQYEGNSRFK VNIFDRTNSE  120
IEYPIKTPKK EENDVDDQFP PASPLLPQKN NIASSNIGDK KDLPAEVDEG DKSSNTQRSQ  180
KPTTEVLGRM HPSTTRGSGA VQTVKEFKYT EQPSCFLVPM CPSYIEKHML WLPSDFAMHV  240
KHLITNSGNL TLRVSEGSTT RTWTVGMKYE KERAKFQSGW SEFVQDNKLN HGDVCDLMLI  300
DKNELLFEVK IFRAREAVDC TFSPDIDEAD AHHEHDDDNG DNDAAHDNRS FTIIIRQSYT  360
TRLVSFFYRQ QDDNMYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-29B3 family protein