PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0100481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 670aa MW: 76538.8 Da PI: 7.1995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0100481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.8	4.1e-19	42	125	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 n+YA++ GFs+rk + +k +n+ +r+f Cskeg+ ++e+ e ++ +r etrtgCka ++ + e +g+w+++ + +HnHe+a RcHm_v2.0_Chr2g0100481 42 NNYAYKKGFSIRKGHLRKDAQNN-PRQREFLCSKEGFLRDEDLC-EVKKVRRLETRTGCKAAFRFNVE-NGVWKISYTNPHHNHEFA 125 89**************96666.9**********99998.899999************9.**************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MESGFQMKML ENGDEGYQFG DCEELKLGME VSSEAEAYEL CNNYAYKKGF SIRKGHLRKD 60 AQNNPRQREF LCSKEGFLRD EDLCEVKKVR RLETRTGCKA AFRFNVENGV WKISYTNPHH 120 NHEFASPEER KFLRSGRNIP SVGAAIVGYR VDESSTPVKA DPILEKECGS ADSVGFTHKD 180 YHSLLQSKKG EMMEARDVQN LVNYFKHKQI EDPNFFYSVK VDQFSRITDF FWRDGGSKLD 240 YDCFGDVVCF DTTFQTNKYN LICAPFVGVN HHWKNVLFGC AFLLDKSVDS CIWLFKTFLE 300 SMGHKQPKTI FTDEDTAIAN ALASVLPETR HRLCSWNISK NATLQLASHY ANPEFKKQVN 360 ICFHDCFTED EFQAAWGNMI KAFSLESNSW LKMIYSLKEK WCPAFSLDTF SANIASGQRG 420 ESMNNIFHQI SRTNGDLISF AHHYEEKTKE MRFKELEEDF HCRNATPCLT INSGVFKQAA 480 TEYTVRMYSF LENELMGIFG VRMTEVGTDG NECIYEATEE GYGRVYRIRF RYDCFTARVS 540 CSCKLFESMG VLCRHALKVL DLKNFTSIPA QYIVKRWTKG AKKGIVVSTD FSKSPYKKAK 600 SAQSSRLSAL MHEGTNVFSL GSLCDSGTRI VKQKLAETMQ LLEGDAETTN MVRNLRRADD 660 SSVCAAVLDD

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MESGFQMKML ENGDEGYQFG DCEELKLGME VSSEAEAYEL CNNYAYKKGF SIRKGHLRKD  60
AQNNPRQREF LCSKEGFLRD EDLCEVKKVR RLETRTGCKA AFRFNVENGV WKISYTNPHH  120
NHEFASPEER KFLRSGRNIP SVGAAIVGYR VDESSTPVKA DPILEKECGS ADSVGFTHKD  180
YHSLLQSKKG EMMEARDVQN LVNYFKHKQI EDPNFFYSVK VDQFSRITDF FWRDGGSKLD  240
YDCFGDVVCF DTTFQTNKYN LICAPFVGVN HHWKNVLFGC AFLLDKSVDS CIWLFKTFLE  300
SMGHKQPKTI FTDEDTAIAN ALASVLPETR HRLCSWNISK NATLQLASHY ANPEFKKQVN  360
ICFHDCFTED EFQAAWGNMI KAFSLESNSW LKMIYSLKEK WCPAFSLDTF SANIASGQRG  420
ESMNNIFHQI SRTNGDLISF AHHYEEKTKE MRFKELEEDF HCRNATPCLT INSGVFKQAA  480
TEYTVRMYSF LENELMGIFG VRMTEVGTDG NECIYEATEE GYGRVYRIRF RYDCFTARVS  540
CSCKLFESMG VLCRHALKVL DLKNFTSIPA QYIVKRWTKG AKKGIVVSTD FSKSPYKKAK  600
SAQSSRLSAL MHEGTNVFSL GSLCDSGTRI VKQKLAETMQ LLEGDAETTN MVRNLRRADD  660
SSVCAAVLDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1 family protein