PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0097121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 274aa MW: 31057.6 Da PI: 5.2251

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0097121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	9.1e-22	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ RcHm_v2.0_Chr2g0097121 90 RQRWTPTPVQLQILEQLFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	102.4	3.1e-33	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq RcHm_v2.0_Chr2g0097121 89 ARQRWTPTPVQLQILEQLFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MMEWDKQHQQ KEQEIEGNGN GNGGVGFVKV MTDEQLETLR KQIAVYATIC EQLVEMHKNL 60 TAQQDLAGVR MGNLYCDPLM TSVGHKITAR QRWTPTPVQL QILEQLFDQG NGTPSKQKIK 120 EITSELSQHG QISETNVYNW FQNRRARSKR KQQNATSNNA ESEVETEVDS PKDKKKGPQD 180 QLLQSQQNTS AQRAEDLCFQ NPEMSSDLHF LDPQGIKEDK MFASSSDLRP SRGLGHMSFY 240 DEVLSSSRGN ELMTGKMEVG GSYNLFQQAE DYSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-95	WOX family protein