PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0094541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 372aa MW: 42003.2 Da PI: 8.3083

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0094541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.4e-24	79	122	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e RcHm_v2.0_Chr2g0094541 79 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 122 79***************************************987 PP
2	QLQ	61.5	2.3e-21	13	48	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i++ RcHm_v2.0_Chr2g0094541 13 PFTPSQWQELEHQALIYKYMVSGIPIPPDLLFSIKR 48 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MMSSSGVRGM RFPFTPSQWQ ELEHQALIYK YMVSGIPIPP DLLFSIKRSC LDSPPLSSKL 60 FSPHIGWNCF QMGLGRKIDP EPGRCRRTDG KKWRCSKEAF ADSKYCERHM HRGKNRSRKP 120 VEVFKATPPT SANSNSNSNS STSPITKIFN SPSNSLSTPF HSLSSLSPNE SSYNSSSSAH 180 LDDHHFLYSR PNMGFSQQER GTSLFLESAS YNNNPLHPNL EYRSNRFGYG VKEDVDEHAF 240 FSEPSGSVRG FSGSSSSLDH HQNESNWQLT MSCSNSSSKQ RTCSALQAEQ YPHLQLQNFS 300 DSKMERREET QRTIHHFFDE GPPKERDSSW LDLDGNSKSS NSGSVSTTRL SISIPNSAHD 360 FPIFNSRNHH ED

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MMSSSGVRGM RFPFTPSQWQ ELEHQALIYK YMVSGIPIPP DLLFSIKRSC LDSPPLSSKL  60
FSPHIGWNCF QMGLGRKIDP EPGRCRRTDG KKWRCSKEAF ADSKYCERHM HRGKNRSRKP  120
VEVFKATPPT SANSNSNSNS STSPITKIFN SPSNSLSTPF HSLSSLSPNE SSYNSSSSAH  180
LDDHHFLYSR PNMGFSQQER GTSLFLESAS YNNNPLHPNL EYRSNRFGYG VKEDVDEHAF  240
FSEPSGSVRG FSGSSSSLDH HQNESNWQLT MSCSNSSSKQ RTCSALQAEQ YPHLQLQNFS  300
DSKMERREET QRTIHHFFDE GPPKERDSSW LDLDGNSKSS NSGSVSTTRL SISIPNSAHD  360
FPIFNSRNHH ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-56	GRF family protein