PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0093821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 327aa    MW: 35983.6 Da    PI: 8.636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0093821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12555146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                            +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++
  RcHm_v2.0_Chr2g0093821  5 KQKWTSEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRN 55
                            79***********************************9***********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMSVSG  60
VGGPREKARM RPRDSPVTLF STPQPSAAAP VKRDPAAALL KRESSAAPVK REAAASLVKG  120
EPVADDSPTE AKTEAKTAPM YNAMIFEALS NSTDPNGLET GAIANFIEQR YVLEKKNEVP  180
QNFRRLLSSR LRRLVAQEKL EKFQNCFKIK SDSSGETKAP PPPKQNDAPL APNAPKQNDT  240
PAAPKQNDVQ LTQLQSHADV IPYETVEEAA VAAAYKIAEA ENKSFVAAEA VKESERVSQM  300
FEDTNSVLQL AEEFLKKCSQ GEVLLVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-46MYB_related family protein