PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0089601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 469aa MW: 51511.9 Da PI: 7.4044

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0089601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	259	314	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ RcHm_v2.0_Chr2g0089601 259 KARRCWSPDLHRRFVSALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 314 68****************************************************97 PP
2	Myb_DNA-binding	39.2	1.6e-12	261	312	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+++++ ++v a ++lGg t+k I + m g+t ++ks++qky+ RcHm_v2.0_Chr2g0089601 261 RRCWSPDLHRRFVSALQMLGGSqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 312 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MGAASPSELS LECKPHSYSM LLKSFGDHHH QAATTTPSHD LKQLEEILSR LEEERLKIDA 60 FKRELPLSMQ LLTTAVEASR QQLQAYRSSS ANNQGPIRPV LEEFIPLKHS NSEGSEKPTN 120 SSDKANWMTS VQLWSQADAT KPKEQADMGF NVSPKLALDT KQQRSYGGGA FHPFSKDIRN 180 SGPSPNLQTL PELALGSPEN KAGENMDQDN KCSELGENGI NCGVVSTTQD QQGKAIEGQT 240 STITTTNTNT STQNSSHRKA RRCWSPDLHR RFVSALQMLG GSQVATPKQI RELMKVDGLT 300 NDEVKSHLQK YRLHTRRPSP SPQTTGGPTP QLVVLGGIWV PPEYATAGHN GPTALYSPAS 360 HAPTHYCATP MPQDFYTTAQ QQPQSGHHQL HHHTLHHQLH VYRASTTSRT QSSPESDLRG 420 NGDRSESIED GKSESGSWKA GTESGEKGMA ARRSEDREES NGSQITLKF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MGAASPSELS LECKPHSYSM LLKSFGDHHH QAATTTPSHD LKQLEEILSR LEEERLKIDA  60
FKRELPLSMQ LLTTAVEASR QQLQAYRSSS ANNQGPIRPV LEEFIPLKHS NSEGSEKPTN  120
SSDKANWMTS VQLWSQADAT KPKEQADMGF NVSPKLALDT KQQRSYGGGA FHPFSKDIRN  180
SGPSPNLQTL PELALGSPEN KAGENMDQDN KCSELGENGI NCGVVSTTQD QQGKAIEGQT  240
STITTTNTNT STQNSSHRKA RRCWSPDLHR RFVSALQMLG GSQVATPKQI RELMKVDGLT  300
NDEVKSHLQK YRLHTRRPSP SPQTTGGPTP QLVVLGGIWV PPEYATAGHN GPTALYSPAS  360
HAPTHYCATP MPQDFYTTAQ QQPQSGHHQL HHHTLHHQLH VYRASTTSRT QSSPESDLRG  420
NGDRSESIED GKSESGSWKA GTESGEKGMA ARRSEDREES NGSQITLKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-103	G2-like family protein