PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 668aa    MW: 73171.5 Da    PI: 6.8643
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23221274155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k++++W++ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  RcHm_v2.0_Chr1g0376681 221 KAKVVWSNSLHNHFLLAIRHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRM 274
                             6799*****************.********************************7 PP
2Myb_DNA-binding23.31.5e-07224273248
                             SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                               W+  ++  ++ a++  G +   +k+I + m+  g+t++++ s++qky+
  RcHm_v2.0_Chr1g0376681 224 VVWSNSLHNHFLLAIRHIGLDkaVPKRILEFMNvPGLTRENVASHLQKYR 273
                             67***********************************************7 PP
3Response_reg73.58.5e-25191251107
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             +l+vdD+ + ++++  +l+   y ev ++ ++ +al +l++ +  +Dl+++D+ mp+m+Glel k  + e  +lp+i+++a ++e+ 
  RcHm_v2.0_Chr1g0376681  19 ILLVDDDITTLNIVSAMLKTWSY-EVVTVPNPIDALSILRKGKcsFDLVVTDLHMPQMNGLELQKLVHDEF-ELPVIMMSADDKESV 103
                             89*********************.*******************************************9999.9************** PP

                             HHHHHHTTESEEEESS--HHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeel 107
                             +l+ l+ G+  +++Kp++++++
  RcHm_v2.0_Chr1g0376681 104 ILKSLEGGVVYYIVKPVSKDDI 125
                             ******************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    
MDAEGVVDRG RQYSANINIL LVDDDITTLN IVSAMLKTWS YEVVTVPNPI DALSILRKGK  60
CSFDLVVTDL HMPQMNGLEL QKLVHDEFEL PVIMMSADDK ESVILKSLEG GVVYYIVKPV  120
SKDDIKMVWQ CVVQSRKSRC SSVTIEEIVQ GASGEFASGQ LLPGPGELED LDCISFNNDF  180
NYKEDHKKEH SSKKKTRKRD RNVDDEEDDG EHDPRVLAKK KAKVVWSNSL HNHFLLAIRH  240
IGLDKAVPKR ILEFMNVPGL TRENVASHLQ KYRMFLKRVA EKARLSKCLS ERVFRSSLAF  300
GLPATPSFNH AQREQYAEYL KQQLQMNDLG LAPPLQNTLA PLGTASHLGS SSLQLPLNYN  360
QQPAALNLAS TSSGPQCHQL FGSGQSHLLV NNTVQQQRLI QLGNGMNTFS QANHGSDFGM  420
QMMNNNVGRI GSYGGLMNNG GNGLMNGGTN WMDIYSQQSQ AKQLQQALNF TSNPFNFGTT  480
PRISSPSIDN LMSPFNNANL GPNLGGRTSQ PAGGFSNIIN GGCNGLVINN EVVNGLTNGV  540
RNVNLNGTTF NAPTLGHIGN NASSSLFETG SANPFAPILP RTSQQQQNAS LLLSPHGLQQ  600
NPYGMSSTFG GGNNDFSVTA LMNNATRNIN NISLANDDDD IMVINNLVLQ QLDNCQPPSH  660
QVYMNLTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-58ARR-B family protein